Gene : Seita.6G056800 S. italica v2.2
Defline:  (1 of 1) PTHR10848:SF1 - MEIOTIC RECOMBINATION PROTEIN SPO11-2 Genomic Order:  568
Name:  ? Seita.6G056800 Secondary Identifier:  ? PAC:32700841
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G056800 0.5kb upstream 0.5kb upstream 3798 true scaffold_6: 4558978-4562775 Setaria italica
Seita.6G056800 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 4558978-4559477 Setaria italica
Seita.6G056800 0.5kb downstream 0.5kb downstream 3798 true scaffold_6: 4559478-4563275 Setaria italica
Seita.6G056800 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 4562776-4563275 Setaria italica
Seita.6G056800 1.0kb upstream 1.0kb upstream 4298 true scaffold_6: 4558478-4562775 Setaria italica
Seita.6G056800 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 4558478-4559477 Setaria italica
Seita.6G056800 1.0kb downstream 1.0kb downstream 4298 true scaffold_6: 4559478-4563775 Setaria italica
Seita.6G056800 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 4562776-4563775 Setaria italica
Seita.6G056800 2.0kb upstream 2.0kb upstream 5298 true scaffold_6: 4557478-4562775 Setaria italica
Seita.6G056800 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 4557478-4559477 Setaria italica
Seita.6G056800 2.0kb downstream 2.0kb downstream 5298 true scaffold_6: 4559478-4564775 Setaria italica
Seita.6G056800 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 4562776-4564775 Setaria italica
Seita.6G056800 5.0kb upstream 5.0kb upstream 8298 true scaffold_6: 4554478-4562775 Setaria italica
Seita.6G056800 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 4554478-4559477 Setaria italica
Seita.6G056800 5.0kb downstream 5.0kb downstream 8298 true scaffold_6: 4559478-4567775 Setaria italica
Seita.6G056800 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 4562776-4567775 Setaria italica
Seita.6G056800 10.0kb upstream 10.0kb upstream 13298 true scaffold_6: 4549478-4562775 Setaria italica
Seita.6G056800 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 4549478-4559477 Setaria italica
Seita.6G056800 10.0kb downstream 10.0kb downstream 13298 true scaffold_6: 4559478-4572775 Setaria italica
Seita.6G056800 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 4562776-4572775 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186904 5267 Panicoideae View MSA
124568767 5269 Grass View MSA
122044830 5273 Angiosperm View MSA
121350394 5274 Embryophyte View MSA
123427912 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.364       High
cufflinks 4.549        
cufflinks 3.667        
cufflinks 3.868        
cufflinks 4.256        
cufflinks 5.115       High
cufflinks 3.731        
cufflinks 4.248        
cufflinks 3.52        
cufflinks 6.053       High
cufflinks 3.827        
cufflinks 3.445        
cufflinks 4.428        
cufflinks 2.947       Low
cufflinks 3.222       Low
cufflinks 5.271       High
cufflinks 4.747        
cufflinks 3.563        
cufflinks 2.987       Low
cufflinks 3.209       Low

0 Strain