Gene : Seita.6G059000 S. italica v2.2
Defline:  (1 of 2) KOG1106 - Uncharacterized conserved protein Genomic Order:  590
Name:  ? Seita.6G059000 Secondary Identifier:  ? PAC:32701150
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G059000 0.5kb upstream 0.5kb upstream 5779 true scaffold_6: 4799885-4805663 Setaria italica
Seita.6G059000 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 4805164-4805663 Setaria italica
Seita.6G059000 0.5kb downstream 0.5kb downstream 5779 true scaffold_6: 4799385-4805163 Setaria italica
Seita.6G059000 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 4799385-4799884 Setaria italica
Seita.6G059000 1.0kb upstream 1.0kb upstream 6279 true scaffold_6: 4799885-4806163 Setaria italica
Seita.6G059000 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 4805164-4806163 Setaria italica
Seita.6G059000 1.0kb downstream 1.0kb downstream 6279 true scaffold_6: 4798885-4805163 Setaria italica
Seita.6G059000 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 4798885-4799884 Setaria italica
Seita.6G059000 2.0kb upstream 2.0kb upstream 7279 true scaffold_6: 4799885-4807163 Setaria italica
Seita.6G059000 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 4805164-4807163 Setaria italica
Seita.6G059000 2.0kb downstream 2.0kb downstream 7279 true scaffold_6: 4797885-4805163 Setaria italica
Seita.6G059000 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 4797885-4799884 Setaria italica
Seita.6G059000 5.0kb upstream 5.0kb upstream 10279 true scaffold_6: 4799885-4810163 Setaria italica
Seita.6G059000 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 4805164-4810163 Setaria italica
Seita.6G059000 5.0kb downstream 5.0kb downstream 10279 true scaffold_6: 4794885-4805163 Setaria italica
Seita.6G059000 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 4794885-4799884 Setaria italica
Seita.6G059000 10.0kb upstream 10.0kb upstream 15279 true scaffold_6: 4799885-4815163 Setaria italica
Seita.6G059000 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 4805164-4815163 Setaria italica
Seita.6G059000 10.0kb downstream 10.0kb downstream 15279 true scaffold_6: 4789885-4805163 Setaria italica
Seita.6G059000 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 4789885-4799884 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181378 5267 Panicoideae View MSA
124586855 5269 Grass View MSA
122043204 5273 Angiosperm View MSA
121351583 5274 Embryophyte View MSA
123423787 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.715       High
cufflinks 2.668        
cufflinks 1.915       Low
cufflinks 1.388       Low
cufflinks 2.326        
cufflinks 3.45        
cufflinks 2.452        
cufflinks 4.443       High
cufflinks 3.951       High
cufflinks 3.834        
cufflinks 3.443        
cufflinks 2.61        
cufflinks 1.862       Low
cufflinks 2.424        
cufflinks 2.715        
cufflinks 3.381        
cufflinks 3.454        
cufflinks 3.173        
cufflinks 1.643       Low
cufflinks 2.421        

0 Strain