Gene : Seita.6G059200 S. italica v2.2
Defline:  (1 of 2) 2.2.1.2 - Transaldolase / Glycerone transferase Genomic Order:  592
Name:  ? Seita.6G059200 Secondary Identifier:  ? PAC:32700116
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica NONOXIPENT-PWY Setaria italica pathologic  
Sitalica PENTOSE-P-PWY Setaria italica pathologic  
Sitalica PWY-5723 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G059200 0.5kb upstream 0.5kb upstream 5362 true scaffold_6: 4817678-4823039 Setaria italica
Seita.6G059200 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 4817678-4818177 Setaria italica
Seita.6G059200 0.5kb downstream 0.5kb downstream 5362 true scaffold_6: 4818178-4823539 Setaria italica
Seita.6G059200 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 4823040-4823539 Setaria italica
Seita.6G059200 1.0kb upstream 1.0kb upstream 5862 true scaffold_6: 4817178-4823039 Setaria italica
Seita.6G059200 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 4817178-4818177 Setaria italica
Seita.6G059200 1.0kb downstream 1.0kb downstream 5862 true scaffold_6: 4818178-4824039 Setaria italica
Seita.6G059200 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 4823040-4824039 Setaria italica
Seita.6G059200 2.0kb upstream 2.0kb upstream 6862 true scaffold_6: 4816178-4823039 Setaria italica
Seita.6G059200 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 4816178-4818177 Setaria italica
Seita.6G059200 2.0kb downstream 2.0kb downstream 6862 true scaffold_6: 4818178-4825039 Setaria italica
Seita.6G059200 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 4823040-4825039 Setaria italica
Seita.6G059200 5.0kb upstream 5.0kb upstream 9862 true scaffold_6: 4813178-4823039 Setaria italica
Seita.6G059200 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 4813178-4818177 Setaria italica
Seita.6G059200 5.0kb downstream 5.0kb downstream 9862 true scaffold_6: 4818178-4828039 Setaria italica
Seita.6G059200 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 4823040-4828039 Setaria italica
Seita.6G059200 10.0kb upstream 10.0kb upstream 14862 true scaffold_6: 4808178-4823039 Setaria italica
Seita.6G059200 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 4808178-4818177 Setaria italica
Seita.6G059200 10.0kb downstream 10.0kb downstream 14862 true scaffold_6: 4818178-4833039 Setaria italica
Seita.6G059200 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 4823040-4833039 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175204 5267 Panicoideae View MSA
124569843 5269 Grass View MSA
122043979 5273 Angiosperm View MSA
121346789 5274 Embryophyte View MSA
123424119 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.072     High  
cufflinks 13.194     High  
cufflinks 3.977       Low
cufflinks 3.75       Low
cufflinks 4.626       Low
cufflinks 10.796        
cufflinks 14.077     High  
cufflinks 18.186     High  
cufflinks 13.846     High  
cufflinks 29.256     High High
cufflinks 23.993     High High
cufflinks 15.18     High  
cufflinks 17.257     High  
cufflinks 4.938       Low
cufflinks 19.124     High  
cufflinks 9.794        
cufflinks 20.373     High  
cufflinks 6.701        
cufflinks 2.943       Low
cufflinks 20.805     High  

0 Strain