Gene : Seita.6G058700 S. italica v2.2
Defline:  (1 of 1) PTHR10972//PTHR10972:SF84 - OXYSTEROL-BINDING PROTEIN-RELATED Genomic Order:  587
Name:  ? Seita.6G058700 Secondary Identifier:  ? PAC:32698830
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G058700 0.5kb upstream 0.5kb upstream 6885 true scaffold_6: 4764566-4771450 Setaria italica
Seita.6G058700 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 4770951-4771450 Setaria italica
Seita.6G058700 0.5kb downstream 0.5kb downstream 6885 true scaffold_6: 4764066-4770950 Setaria italica
Seita.6G058700 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 4764066-4764565 Setaria italica
Seita.6G058700 1.0kb upstream 1.0kb upstream 7385 true scaffold_6: 4764566-4771950 Setaria italica
Seita.6G058700 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 4770951-4771950 Setaria italica
Seita.6G058700 1.0kb downstream 1.0kb downstream 7385 true scaffold_6: 4763566-4770950 Setaria italica
Seita.6G058700 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 4763566-4764565 Setaria italica
Seita.6G058700 2.0kb upstream 2.0kb upstream 8385 true scaffold_6: 4764566-4772950 Setaria italica
Seita.6G058700 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 4770951-4772950 Setaria italica
Seita.6G058700 2.0kb downstream 2.0kb downstream 8385 true scaffold_6: 4762566-4770950 Setaria italica
Seita.6G058700 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 4762566-4764565 Setaria italica
Seita.6G058700 5.0kb upstream 5.0kb upstream 11385 true scaffold_6: 4764566-4775950 Setaria italica
Seita.6G058700 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 4770951-4775950 Setaria italica
Seita.6G058700 5.0kb downstream 5.0kb downstream 11385 true scaffold_6: 4759566-4770950 Setaria italica
Seita.6G058700 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 4759566-4764565 Setaria italica
Seita.6G058700 10.0kb upstream 10.0kb upstream 16385 true scaffold_6: 4764566-4780950 Setaria italica
Seita.6G058700 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 4770951-4780950 Setaria italica
Seita.6G058700 10.0kb downstream 10.0kb downstream 16385 true scaffold_6: 4754566-4770950 Setaria italica
Seita.6G058700 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 4754566-4764565 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187527 5267 Panicoideae View MSA
124588741 5269 Grass View MSA
122049875 5273 Angiosperm View MSA
121348074 5274 Embryophyte View MSA
123428535 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.964       High
cufflinks 3.604       High
cufflinks 0.789       Low
cufflinks 0.656       Low
cufflinks 0.788       Low
cufflinks 3.956       High
cufflinks 2.384        
cufflinks 1.614        
cufflinks 1.304        
cufflinks 1.236        
cufflinks 2.729        
cufflinks 2.37        
cufflinks 1.608        
cufflinks 1.047        
cufflinks 1.281        
cufflinks 2.449        
cufflinks 1.525        
cufflinks 2.283        
cufflinks 0.914       Low
cufflinks 2.019        

0 Strain