Gene : Seita.6G058800 S. italica v2.2
Defline:  (1 of 1) PTHR13829 - SNRNP CORE PROTEIN FAMILY MEMBER Genomic Order:  588
Name:  ? Seita.6G058800 Secondary Identifier:  ? PAC:32700371
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G058800 0.5kb upstream 0.5kb upstream 6260 true scaffold_6: 4780146-4786405 Setaria italica
Seita.6G058800 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 4785906-4786405 Setaria italica
Seita.6G058800 0.5kb downstream 0.5kb downstream 6260 true scaffold_6: 4779646-4785905 Setaria italica
Seita.6G058800 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 4779646-4780145 Setaria italica
Seita.6G058800 1.0kb upstream 1.0kb upstream 6760 true scaffold_6: 4780146-4786905 Setaria italica
Seita.6G058800 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 4785906-4786905 Setaria italica
Seita.6G058800 1.0kb downstream 1.0kb downstream 6760 true scaffold_6: 4779146-4785905 Setaria italica
Seita.6G058800 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 4779146-4780145 Setaria italica
Seita.6G058800 2.0kb upstream 2.0kb upstream 7760 true scaffold_6: 4780146-4787905 Setaria italica
Seita.6G058800 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 4785906-4787905 Setaria italica
Seita.6G058800 2.0kb downstream 2.0kb downstream 7760 true scaffold_6: 4778146-4785905 Setaria italica
Seita.6G058800 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 4778146-4780145 Setaria italica
Seita.6G058800 5.0kb upstream 5.0kb upstream 10760 true scaffold_6: 4780146-4790905 Setaria italica
Seita.6G058800 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 4785906-4790905 Setaria italica
Seita.6G058800 5.0kb downstream 5.0kb downstream 10760 true scaffold_6: 4775146-4785905 Setaria italica
Seita.6G058800 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 4775146-4780145 Setaria italica
Seita.6G058800 10.0kb upstream 10.0kb upstream 15760 true scaffold_6: 4780146-4795905 Setaria italica
Seita.6G058800 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 4785906-4795905 Setaria italica
Seita.6G058800 10.0kb downstream 10.0kb downstream 15760 true scaffold_6: 4770146-4785905 Setaria italica
Seita.6G058800 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 4770146-4780145 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193782 5267 Panicoideae View MSA
124581049 5269 Grass View MSA
122043046 5273 Angiosperm View MSA
121347447 5274 Embryophyte View MSA
123425045 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.651        
cufflinks 7.602       High
cufflinks 3.215       Low
cufflinks 3.051       Low
cufflinks 3.261       Low
cufflinks 7.499       High
cufflinks 4.747        
cufflinks 6.74        
cufflinks 4.46        
cufflinks 12.577       High
cufflinks 6.816        
cufflinks 4.273        
cufflinks 5.765        
cufflinks 4.896        
cufflinks 6.035        
cufflinks 3.855        
cufflinks 6.2        
cufflinks 4.993        
cufflinks 3.147       Low
cufflinks 5.597        

0 Strain