Gene : Seita.6G062500 S. italica v2.2
Defline:  (1 of 1) PTHR22912:SF97 - MONODEHYDROASCORBATE REDUCTASE, CHLOROPLASTIC Genomic Order:  625
Name:  ? Seita.6G062500 Secondary Identifier:  ? PAC:32699560
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G062500 0.5kb upstream 0.5kb upstream 5009 true scaffold_6: 5194261-5199269 Setaria italica
Seita.6G062500 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 5198770-5199269 Setaria italica
Seita.6G062500 0.5kb downstream 0.5kb downstream 5009 true scaffold_6: 5193761-5198769 Setaria italica
Seita.6G062500 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 5193761-5194260 Setaria italica
Seita.6G062500 1.0kb upstream 1.0kb upstream 5509 true scaffold_6: 5194261-5199769 Setaria italica
Seita.6G062500 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 5198770-5199769 Setaria italica
Seita.6G062500 1.0kb downstream 1.0kb downstream 5509 true scaffold_6: 5193261-5198769 Setaria italica
Seita.6G062500 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 5193261-5194260 Setaria italica
Seita.6G062500 2.0kb upstream 2.0kb upstream 6509 true scaffold_6: 5194261-5200769 Setaria italica
Seita.6G062500 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 5198770-5200769 Setaria italica
Seita.6G062500 2.0kb downstream 2.0kb downstream 6509 true scaffold_6: 5192261-5198769 Setaria italica
Seita.6G062500 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 5192261-5194260 Setaria italica
Seita.6G062500 5.0kb upstream 5.0kb upstream 9509 true scaffold_6: 5194261-5203769 Setaria italica
Seita.6G062500 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 5198770-5203769 Setaria italica
Seita.6G062500 5.0kb downstream 5.0kb downstream 9509 true scaffold_6: 5189261-5198769 Setaria italica
Seita.6G062500 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 5189261-5194260 Setaria italica
Seita.6G062500 10.0kb upstream 10.0kb upstream 14509 true scaffold_6: 5194261-5208769 Setaria italica
Seita.6G062500 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 5198770-5208769 Setaria italica
Seita.6G062500 10.0kb downstream 10.0kb downstream 14509 true scaffold_6: 5184261-5198769 Setaria italica
Seita.6G062500 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 5184261-5194260 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190451 5267 Panicoideae View MSA
124574129 5269 Grass View MSA
122042450 5273 Angiosperm View MSA
121347502 5274 Embryophyte View MSA
123426698 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.1        
cufflinks 6.832        
cufflinks 6.749        
cufflinks 5.61        
cufflinks 5.564        
cufflinks 6.19        
cufflinks 8.573        
cufflinks 6.7        
cufflinks 6.471        
cufflinks 6.781        
cufflinks 6.169        
cufflinks 10.646        
cufflinks 19.929     High High
cufflinks 8.369        
cufflinks 21.551     High High
cufflinks 4.823        
cufflinks 31.434     High High
cufflinks 3.43       Low
cufflinks 9.904        
cufflinks 23.409     High High

0 Strain