Gene : Seita.6G063200 S. italica v2.2
Defline:  (1 of 1) PTHR11946:SF53 - TYROSINE-TRNA LIGASE Genomic Order:  632
Name:  ? Seita.6G063200 Secondary Identifier:  ? PAC:32699738
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica TRNA-CHARGING-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G063200 0.5kb upstream 0.5kb upstream 4385 true scaffold_6: 5238536-5242920 Setaria italica
Seita.6G063200 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 5242421-5242920 Setaria italica
Seita.6G063200 0.5kb downstream 0.5kb downstream 4385 true scaffold_6: 5238036-5242420 Setaria italica
Seita.6G063200 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 5238036-5238535 Setaria italica
Seita.6G063200 1.0kb upstream 1.0kb upstream 4885 true scaffold_6: 5238536-5243420 Setaria italica
Seita.6G063200 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 5242421-5243420 Setaria italica
Seita.6G063200 1.0kb downstream 1.0kb downstream 4885 true scaffold_6: 5237536-5242420 Setaria italica
Seita.6G063200 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 5237536-5238535 Setaria italica
Seita.6G063200 2.0kb upstream 2.0kb upstream 5885 true scaffold_6: 5238536-5244420 Setaria italica
Seita.6G063200 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 5242421-5244420 Setaria italica
Seita.6G063200 2.0kb downstream 2.0kb downstream 5885 true scaffold_6: 5236536-5242420 Setaria italica
Seita.6G063200 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 5236536-5238535 Setaria italica
Seita.6G063200 5.0kb upstream 5.0kb upstream 8885 true scaffold_6: 5238536-5247420 Setaria italica
Seita.6G063200 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 5242421-5247420 Setaria italica
Seita.6G063200 5.0kb downstream 5.0kb downstream 8885 true scaffold_6: 5233536-5242420 Setaria italica
Seita.6G063200 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 5233536-5238535 Setaria italica
Seita.6G063200 10.0kb upstream 10.0kb upstream 13885 true scaffold_6: 5238536-5252420 Setaria italica
Seita.6G063200 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 5242421-5252420 Setaria italica
Seita.6G063200 10.0kb downstream 10.0kb downstream 13885 true scaffold_6: 5228536-5242420 Setaria italica
Seita.6G063200 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 5228536-5238535 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041140 5273 Angiosperm View MSA
122179139 5267 Panicoideae View MSA
124589437 5269 Grass View MSA
121344192 5274 Embryophyte View MSA
123424631 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.791        
cufflinks 15.18     High  
cufflinks 5.795       Low
cufflinks 3.665       Low
cufflinks 6.134       Low
cufflinks 14.178     High  
cufflinks 10.683        
cufflinks 14.098     High  
cufflinks 15.461     High  
cufflinks 12.676        
cufflinks 14.662     High  
cufflinks 15.738     High  
cufflinks 9.996        
cufflinks 10.63        
cufflinks 14.78     High  
cufflinks 7.812        
cufflinks 14.72     High  
cufflinks 13.758     High  
cufflinks 6.84       Low
cufflinks 13.83        

0 Strain