Gene : Seita.6G060600 S. italica v2.2
Defline:  (1 of 1) PTHR12358//PTHR12358:SF37 - SPHINGOSINE KINASE Genomic Order:  606
Name:  ? Seita.6G060600 Secondary Identifier:  ? PAC:32701495
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5129 Setaria italica pathologic  
Sitalica PWY-6483 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G060600 0.5kb upstream 0.5kb upstream 5423 true scaffold_6: 4946789-4952211 Setaria italica
Seita.6G060600 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 4951712-4952211 Setaria italica
Seita.6G060600 0.5kb downstream 0.5kb downstream 5423 true scaffold_6: 4946289-4951711 Setaria italica
Seita.6G060600 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 4946289-4946788 Setaria italica
Seita.6G060600 1.0kb upstream 1.0kb upstream 5923 true scaffold_6: 4946789-4952711 Setaria italica
Seita.6G060600 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 4951712-4952711 Setaria italica
Seita.6G060600 1.0kb downstream 1.0kb downstream 5923 true scaffold_6: 4945789-4951711 Setaria italica
Seita.6G060600 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 4945789-4946788 Setaria italica
Seita.6G060600 2.0kb upstream 2.0kb upstream 6923 true scaffold_6: 4946789-4953711 Setaria italica
Seita.6G060600 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 4951712-4953711 Setaria italica
Seita.6G060600 2.0kb downstream 2.0kb downstream 6923 true scaffold_6: 4944789-4951711 Setaria italica
Seita.6G060600 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 4944789-4946788 Setaria italica
Seita.6G060600 5.0kb upstream 5.0kb upstream 9923 true scaffold_6: 4946789-4956711 Setaria italica
Seita.6G060600 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 4951712-4956711 Setaria italica
Seita.6G060600 5.0kb downstream 5.0kb downstream 9923 true scaffold_6: 4941789-4951711 Setaria italica
Seita.6G060600 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 4941789-4946788 Setaria italica
Seita.6G060600 10.0kb upstream 10.0kb upstream 14923 true scaffold_6: 4946789-4961711 Setaria italica
Seita.6G060600 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 4951712-4961711 Setaria italica
Seita.6G060600 10.0kb downstream 10.0kb downstream 14923 true scaffold_6: 4936789-4951711 Setaria italica
Seita.6G060600 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 4936789-4946788 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189104 5267 Panicoideae View MSA
124583970 5269 Grass View MSA
122046814 5273 Angiosperm View MSA
121349004 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.213       High
cufflinks 2.925        
cufflinks 3.879        
cufflinks 4.365       High
cufflinks 3.038        
cufflinks 3.063        
cufflinks 3.125        
cufflinks 2.448       Low
cufflinks 2.181       Low
cufflinks 2.798        
cufflinks 3.17        
cufflinks 3.13        
cufflinks 2.996        
cufflinks 2.824        
cufflinks 2.598        
cufflinks 4.951       High
cufflinks 2.724        
cufflinks 5.667       High
cufflinks 2.9        
cufflinks 2.292       Low

0 Strain