Gene : Seita.6G063600 S. italica v2.2
Defline:  (1 of 1) PTHR24078:SF315 - MOLECULAR CHAPERONE DNAJ Genomic Order:  636
Name:  ? Seita.6G063600 Secondary Identifier:  ? PAC:32699693
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G063600 0.5kb upstream 0.5kb upstream 4849 true scaffold_6: 5296457-5301305 Setaria italica
Seita.6G063600 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 5300806-5301305 Setaria italica
Seita.6G063600 0.5kb downstream 0.5kb downstream 4849 true scaffold_6: 5295957-5300805 Setaria italica
Seita.6G063600 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 5295957-5296456 Setaria italica
Seita.6G063600 1.0kb upstream 1.0kb upstream 5349 true scaffold_6: 5296457-5301805 Setaria italica
Seita.6G063600 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 5300806-5301805 Setaria italica
Seita.6G063600 1.0kb downstream 1.0kb downstream 5349 true scaffold_6: 5295457-5300805 Setaria italica
Seita.6G063600 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 5295457-5296456 Setaria italica
Seita.6G063600 2.0kb upstream 2.0kb upstream 6349 true scaffold_6: 5296457-5302805 Setaria italica
Seita.6G063600 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 5300806-5302805 Setaria italica
Seita.6G063600 2.0kb downstream 2.0kb downstream 6349 true scaffold_6: 5294457-5300805 Setaria italica
Seita.6G063600 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 5294457-5296456 Setaria italica
Seita.6G063600 5.0kb upstream 5.0kb upstream 9349 true scaffold_6: 5296457-5305805 Setaria italica
Seita.6G063600 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 5300806-5305805 Setaria italica
Seita.6G063600 5.0kb downstream 5.0kb downstream 9349 true scaffold_6: 5291457-5300805 Setaria italica
Seita.6G063600 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 5291457-5296456 Setaria italica
Seita.6G063600 10.0kb upstream 10.0kb upstream 14349 true scaffold_6: 5296457-5310805 Setaria italica
Seita.6G063600 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 5300806-5310805 Setaria italica
Seita.6G063600 10.0kb downstream 10.0kb downstream 14349 true scaffold_6: 5286457-5300805 Setaria italica
Seita.6G063600 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 5286457-5296456 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176553 5267 Panicoideae View MSA
124586416 5269 Grass View MSA
122046285 5273 Angiosperm View MSA
121345054 5274 Embryophyte View MSA
123424364 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.468     High  
cufflinks 15.792     High  
cufflinks 33.324     High High
cufflinks 24.305     High  
cufflinks 29.64     High  
cufflinks 19.763     High  
cufflinks 24.158     High  
cufflinks 34.085     High High
cufflinks 57.717     High High
cufflinks 8.107       Low
cufflinks 11.005        
cufflinks 10.401       Low
cufflinks 10.265       Low
cufflinks 37.23     High High
cufflinks 9.379       Low
cufflinks 20.402     High  
cufflinks 11.417        
cufflinks 17.042     High  
cufflinks 32.614     High High
cufflinks 9.998       Low

0 Strain