Gene : Seita.6G075300 S. italica v2.2
Genomic Order:  753 Name:  ? Seita.6G075300
Secondary Identifier:  ? PAC:32701227
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G075300 0.5kb upstream 0.5kb upstream 5141 true scaffold_6: 6613061-6618201 Setaria italica
Seita.6G075300 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 6613061-6613560 Setaria italica
Seita.6G075300 0.5kb downstream 0.5kb downstream 5141 true scaffold_6: 6613561-6618701 Setaria italica
Seita.6G075300 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 6618202-6618701 Setaria italica
Seita.6G075300 1.0kb upstream 1.0kb upstream 5641 true scaffold_6: 6612561-6618201 Setaria italica
Seita.6G075300 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 6612561-6613560 Setaria italica
Seita.6G075300 1.0kb downstream 1.0kb downstream 5641 true scaffold_6: 6613561-6619201 Setaria italica
Seita.6G075300 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 6618202-6619201 Setaria italica
Seita.6G075300 2.0kb upstream 2.0kb upstream 6641 true scaffold_6: 6611561-6618201 Setaria italica
Seita.6G075300 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 6611561-6613560 Setaria italica
Seita.6G075300 2.0kb downstream 2.0kb downstream 6641 true scaffold_6: 6613561-6620201 Setaria italica
Seita.6G075300 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 6618202-6620201 Setaria italica
Seita.6G075300 5.0kb upstream 5.0kb upstream 9641 true scaffold_6: 6608561-6618201 Setaria italica
Seita.6G075300 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 6608561-6613560 Setaria italica
Seita.6G075300 5.0kb downstream 5.0kb downstream 9641 true scaffold_6: 6613561-6623201 Setaria italica
Seita.6G075300 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 6618202-6623201 Setaria italica
Seita.6G075300 10.0kb upstream 10.0kb upstream 14641 true scaffold_6: 6603561-6618201 Setaria italica
Seita.6G075300 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 6603561-6613560 Setaria italica
Seita.6G075300 10.0kb downstream 10.0kb downstream 14641 true scaffold_6: 6613561-6628201 Setaria italica
Seita.6G075300 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 6618202-6628201 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041414 5273 Angiosperm View MSA
122194995 5267 Panicoideae View MSA
124580373 5269 Grass View MSA
121349870 5274 Embryophyte View MSA
123381480 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.27        
cufflinks 5.6        
cufflinks 3.855        
cufflinks 3.792        
cufflinks 3.353        
cufflinks 6.258       High
cufflinks 4.941        
cufflinks 3.544        
cufflinks 3.492        
cufflinks 1.931       Low
cufflinks 4.392        
cufflinks 4.735        
cufflinks 5.18        
cufflinks 2.51       Low
cufflinks 4.791        
cufflinks 5.544        
cufflinks 5.526        
cufflinks 5.651        
cufflinks 2.729       Low
cufflinks 5.113        

0 Strain