Gene : Seita.6G075200 S. italica v2.2
Defline:  (1 of 1) 6.2.1.26 - o-succinylbenzoate--CoA ligase / OSB-CoA synthetase Genomic Order:  752
Name:  ? Seita.6G075200 Secondary Identifier:  ? PAC:32700363
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5837 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G075200 0.5kb upstream 0.5kb upstream 3849 true scaffold_6: 6609616-6613464 Setaria italica
Seita.6G075200 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 6609616-6610115 Setaria italica
Seita.6G075200 0.5kb downstream 0.5kb downstream 3849 true scaffold_6: 6610116-6613964 Setaria italica
Seita.6G075200 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 6613465-6613964 Setaria italica
Seita.6G075200 1.0kb upstream 1.0kb upstream 4349 true scaffold_6: 6609116-6613464 Setaria italica
Seita.6G075200 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 6609116-6610115 Setaria italica
Seita.6G075200 1.0kb downstream 1.0kb downstream 4349 true scaffold_6: 6610116-6614464 Setaria italica
Seita.6G075200 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 6613465-6614464 Setaria italica
Seita.6G075200 2.0kb upstream 2.0kb upstream 5349 true scaffold_6: 6608116-6613464 Setaria italica
Seita.6G075200 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 6608116-6610115 Setaria italica
Seita.6G075200 2.0kb downstream 2.0kb downstream 5349 true scaffold_6: 6610116-6615464 Setaria italica
Seita.6G075200 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 6613465-6615464 Setaria italica
Seita.6G075200 5.0kb upstream 5.0kb upstream 8349 true scaffold_6: 6605116-6613464 Setaria italica
Seita.6G075200 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 6605116-6610115 Setaria italica
Seita.6G075200 5.0kb downstream 5.0kb downstream 8349 true scaffold_6: 6610116-6618464 Setaria italica
Seita.6G075200 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 6613465-6618464 Setaria italica
Seita.6G075200 10.0kb upstream 10.0kb upstream 13349 true scaffold_6: 6600116-6613464 Setaria italica
Seita.6G075200 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 6600116-6610115 Setaria italica
Seita.6G075200 10.0kb downstream 10.0kb downstream 13349 true scaffold_6: 6610116-6623464 Setaria italica
Seita.6G075200 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 6613465-6623464 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189110 5267 Panicoideae View MSA
124581265 5269 Grass View MSA
122042580 5273 Angiosperm View MSA
121346156 5274 Embryophyte View MSA
123427881 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.687        
cufflinks 0.836        
cufflinks 0.211       Low
cufflinks 0.161       Low
cufflinks 3.552       High
cufflinks 0.506        
cufflinks 5.524       High
cufflinks 4.912       High
cufflinks 9.2       High
cufflinks 0.32     Low  
cufflinks 0.516        
cufflinks 0.227       Low
cufflinks 2.994       High
cufflinks 0.364        
cufflinks 0.742        
cufflinks 2.905        
cufflinks 0.274        
cufflinks 0.512        
cufflinks 1.185        
cufflinks 0.254        

0 Strain