Gene : Seita.6G077800 S. italica v2.2
Defline:  (1 of 2) PTHR12942 - STEP II SPLICING FACTOR SLU7 Genomic Order:  778
Name:  ? Seita.6G077800 Secondary Identifier:  ? PAC:32698621
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G077800 0.5kb upstream 0.5kb upstream 4849 true scaffold_6: 6980395-6985243 Setaria italica
Seita.6G077800 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 6984744-6985243 Setaria italica
Seita.6G077800 0.5kb downstream 0.5kb downstream 4849 true scaffold_6: 6979895-6984743 Setaria italica
Seita.6G077800 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 6979895-6980394 Setaria italica
Seita.6G077800 1.0kb upstream 1.0kb upstream 5349 true scaffold_6: 6980395-6985743 Setaria italica
Seita.6G077800 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 6984744-6985743 Setaria italica
Seita.6G077800 1.0kb downstream 1.0kb downstream 5349 true scaffold_6: 6979395-6984743 Setaria italica
Seita.6G077800 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 6979395-6980394 Setaria italica
Seita.6G077800 2.0kb upstream 2.0kb upstream 6349 true scaffold_6: 6980395-6986743 Setaria italica
Seita.6G077800 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 6984744-6986743 Setaria italica
Seita.6G077800 2.0kb downstream 2.0kb downstream 6349 true scaffold_6: 6978395-6984743 Setaria italica
Seita.6G077800 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 6978395-6980394 Setaria italica
Seita.6G077800 5.0kb upstream 5.0kb upstream 9349 true scaffold_6: 6980395-6989743 Setaria italica
Seita.6G077800 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 6984744-6989743 Setaria italica
Seita.6G077800 5.0kb downstream 5.0kb downstream 9349 true scaffold_6: 6975395-6984743 Setaria italica
Seita.6G077800 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 6975395-6980394 Setaria italica
Seita.6G077800 10.0kb upstream 10.0kb upstream 14349 true scaffold_6: 6980395-6994743 Setaria italica
Seita.6G077800 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 6984744-6994743 Setaria italica
Seita.6G077800 10.0kb downstream 10.0kb downstream 14349 true scaffold_6: 6970395-6984743 Setaria italica
Seita.6G077800 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 6970395-6980394 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197384 5267 Panicoideae View MSA
124576110 5269 Grass View MSA
122043272 5273 Angiosperm View MSA
121344564 5274 Embryophyte View MSA
123424269 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.418     High  
cufflinks 30.549     High  
cufflinks 34.79     High  
cufflinks 43.146     High  
cufflinks 40.513     High  
cufflinks 31.314     High  
cufflinks 26.121     High Low
cufflinks 27.602     High  
cufflinks 31.395     High  
cufflinks 17.72     High Low
cufflinks 37.425     High  
cufflinks 53.965     High High
cufflinks 35.343     High  
cufflinks 33.102     High  
cufflinks 35.641     High  
cufflinks 33.393     High  
cufflinks 40.059     High  
cufflinks 81.132     High High
cufflinks 31.959     High  
cufflinks 33.173     High  

0 Strain