Gene : Seita.6G166800 S. italica v2.2
Defline:  (1 of 15) PF00069//PF08263 - Protein kinase domain (Pkinase) // Leucine rich repeat N-terminal domain (LRRNT_2) Genomic Order:  1668
Name:  ? Seita.6G166800 Secondary Identifier:  ? PAC:32698664
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G166800 0.5kb upstream 0.5kb upstream 6245 true scaffold_6: 28955819-28962063 Setaria italica
Seita.6G166800 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 28961564-28962063 Setaria italica
Seita.6G166800 0.5kb downstream 0.5kb downstream 6245 true scaffold_6: 28955319-28961563 Setaria italica
Seita.6G166800 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 28955319-28955818 Setaria italica
Seita.6G166800 1.0kb upstream 1.0kb upstream 6745 true scaffold_6: 28955819-28962563 Setaria italica
Seita.6G166800 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 28961564-28962563 Setaria italica
Seita.6G166800 1.0kb downstream 1.0kb downstream 6745 true scaffold_6: 28954819-28961563 Setaria italica
Seita.6G166800 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 28954819-28955818 Setaria italica
Seita.6G166800 2.0kb upstream 2.0kb upstream 7745 true scaffold_6: 28955819-28963563 Setaria italica
Seita.6G166800 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 28961564-28963563 Setaria italica
Seita.6G166800 2.0kb downstream 2.0kb downstream 7745 true scaffold_6: 28953819-28961563 Setaria italica
Seita.6G166800 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 28953819-28955818 Setaria italica
Seita.6G166800 5.0kb upstream 5.0kb upstream 10745 true scaffold_6: 28955819-28966563 Setaria italica
Seita.6G166800 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 28961564-28966563 Setaria italica
Seita.6G166800 5.0kb downstream 5.0kb downstream 10745 true scaffold_6: 28950819-28961563 Setaria italica
Seita.6G166800 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 28950819-28955818 Setaria italica
Seita.6G166800 10.0kb upstream 10.0kb upstream 15745 true scaffold_6: 28955819-28971563 Setaria italica
Seita.6G166800 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 28961564-28971563 Setaria italica
Seita.6G166800 10.0kb downstream 10.0kb downstream 15745 true scaffold_6: 28945819-28961563 Setaria italica
Seita.6G166800 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 28945819-28955818 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180643 5267 Panicoideae View MSA
124569194 5269 Grass View MSA
122046482 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.34       High
cufflinks 4.922       High
cufflinks 0.062     Low Low
cufflinks 0.089       Low
cufflinks 0.381        
cufflinks 4.71       High
cufflinks 1.797        
cufflinks 0.764        
cufflinks 4.155       High
cufflinks 2.01        
cufflinks 3.825        
cufflinks 1.873        
cufflinks 1.173        
cufflinks 0.468        
cufflinks 2.793        
cufflinks 0.965        
cufflinks 1.12        
cufflinks 1.627        
cufflinks 0.354        
cufflinks 1.946        

0 Strain