Gene : Seita.6G171300 S. italica v2.2
Defline:  (1 of 2) PF06172 - Cupin superfamily (DUF985) (Cupin_5) Genomic Order:  1713
Name:  ? Seita.6G171300 Secondary Identifier:  ? PAC:32700954
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G171300 0.5kb upstream 0.5kb upstream 3283 true scaffold_6: 29503232-29506514 Setaria italica
Seita.6G171300 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 29503232-29503731 Setaria italica
Seita.6G171300 0.5kb downstream 0.5kb downstream 3283 true scaffold_6: 29503732-29507014 Setaria italica
Seita.6G171300 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 29506515-29507014 Setaria italica
Seita.6G171300 1.0kb upstream 1.0kb upstream 3783 true scaffold_6: 29502732-29506514 Setaria italica
Seita.6G171300 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 29502732-29503731 Setaria italica
Seita.6G171300 1.0kb downstream 1.0kb downstream 3783 true scaffold_6: 29503732-29507514 Setaria italica
Seita.6G171300 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 29506515-29507514 Setaria italica
Seita.6G171300 2.0kb upstream 2.0kb upstream 4783 true scaffold_6: 29501732-29506514 Setaria italica
Seita.6G171300 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 29501732-29503731 Setaria italica
Seita.6G171300 2.0kb downstream 2.0kb downstream 4783 true scaffold_6: 29503732-29508514 Setaria italica
Seita.6G171300 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 29506515-29508514 Setaria italica
Seita.6G171300 5.0kb upstream 5.0kb upstream 7783 true scaffold_6: 29498732-29506514 Setaria italica
Seita.6G171300 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 29498732-29503731 Setaria italica
Seita.6G171300 5.0kb downstream 5.0kb downstream 7783 true scaffold_6: 29503732-29511514 Setaria italica
Seita.6G171300 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 29506515-29511514 Setaria italica
Seita.6G171300 10.0kb upstream 10.0kb upstream 12783 true scaffold_6: 29493732-29506514 Setaria italica
Seita.6G171300 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 29493732-29503731 Setaria italica
Seita.6G171300 10.0kb downstream 10.0kb downstream 12783 true scaffold_6: 29503732-29516514 Setaria italica
Seita.6G171300 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 29506515-29516514 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188914 5267 Panicoideae View MSA
124579008 5269 Grass View MSA
122051010 5273 Angiosperm View MSA
121346638 5274 Embryophyte View MSA
123426052 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.556        
cufflinks 10.834        
cufflinks 4.688       Low
cufflinks 5.076       Low
cufflinks 5.841       Low
cufflinks 10.07        
cufflinks 6.517        
cufflinks 8.347        
cufflinks 5.337       Low
cufflinks 21.948     High High
cufflinks 11.646        
cufflinks 12.719        
cufflinks 16.563     High High
cufflinks 10.736        
cufflinks 14.554     High  
cufflinks 5.48       Low
cufflinks 15.608     High High
cufflinks 5.557       Low
cufflinks 8.47        
cufflinks 14.533     High  

0 Strain