Gene : Seita.6G173700 S. italica v2.2
Defline:  (1 of 1) PTHR22893:SF67 - 12-OXOPHYTODIENOATE REDUCTASE 3 Genomic Order:  1737
Name:  ? Seita.6G173700 Secondary Identifier:  ? PAC:32700519
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-735 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G173700 0.5kb upstream 0.5kb upstream 5604 true scaffold_6: 29767164-29772767 Setaria italica
Seita.6G173700 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 29767164-29767663 Setaria italica
Seita.6G173700 0.5kb downstream 0.5kb downstream 5604 true scaffold_6: 29767664-29773267 Setaria italica
Seita.6G173700 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 29772768-29773267 Setaria italica
Seita.6G173700 1.0kb upstream 1.0kb upstream 6104 true scaffold_6: 29766664-29772767 Setaria italica
Seita.6G173700 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 29766664-29767663 Setaria italica
Seita.6G173700 1.0kb downstream 1.0kb downstream 6104 true scaffold_6: 29767664-29773767 Setaria italica
Seita.6G173700 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 29772768-29773767 Setaria italica
Seita.6G173700 2.0kb upstream 2.0kb upstream 7104 true scaffold_6: 29765664-29772767 Setaria italica
Seita.6G173700 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 29765664-29767663 Setaria italica
Seita.6G173700 2.0kb downstream 2.0kb downstream 7104 true scaffold_6: 29767664-29774767 Setaria italica
Seita.6G173700 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 29772768-29774767 Setaria italica
Seita.6G173700 5.0kb upstream 5.0kb upstream 10104 true scaffold_6: 29762664-29772767 Setaria italica
Seita.6G173700 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 29762664-29767663 Setaria italica
Seita.6G173700 5.0kb downstream 5.0kb downstream 10104 true scaffold_6: 29767664-29777767 Setaria italica
Seita.6G173700 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 29772768-29777767 Setaria italica
Seita.6G173700 10.0kb upstream 10.0kb upstream 15104 true scaffold_6: 29757664-29772767 Setaria italica
Seita.6G173700 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 29757664-29767663 Setaria italica
Seita.6G173700 10.0kb downstream 10.0kb downstream 15104 true scaffold_6: 29767664-29782767 Setaria italica
Seita.6G173700 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 29772768-29782767 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192557 5267 Panicoideae View MSA
124576769 5269 Grass View MSA
122045758 5273 Angiosperm View MSA
121351640 5274 Embryophyte View MSA
123428487 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.678        
cufflinks 2.151        
cufflinks 1.237        
cufflinks 1.257        
cufflinks 1.406        
cufflinks 2.385        
cufflinks 1.613        
cufflinks 2.849        
cufflinks 3.154        
cufflinks 4.128       High
cufflinks 3.468        
cufflinks 1.897        
cufflinks 2.557        
cufflinks 3.948       High
cufflinks 3.03        
cufflinks 0.573       Low
cufflinks 2.594        
cufflinks 0.354       Low
cufflinks 1.526        
cufflinks 2.946        

0 Strain