Gene : Seita.6G181200 S. italica v2.2
Defline:  (1 of 2) 2.4.1.214 - Glycoprotein 3-alpha-L-fucosyltransferase / GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha-1,3-fucosyltransferase Genomic Order:  1812
Name:  ? Seita.6G181200 Secondary Identifier:  ? PAC:32701307
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G181200 0.5kb upstream 0.5kb upstream 9901 true scaffold_6: 30571907-30581807 Setaria italica
Seita.6G181200 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 30571907-30572406 Setaria italica
Seita.6G181200 0.5kb downstream 0.5kb downstream 9901 true scaffold_6: 30572407-30582307 Setaria italica
Seita.6G181200 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 30581808-30582307 Setaria italica
Seita.6G181200 1.0kb upstream 1.0kb upstream 10401 true scaffold_6: 30571407-30581807 Setaria italica
Seita.6G181200 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 30571407-30572406 Setaria italica
Seita.6G181200 1.0kb downstream 1.0kb downstream 10401 true scaffold_6: 30572407-30582807 Setaria italica
Seita.6G181200 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 30581808-30582807 Setaria italica
Seita.6G181200 2.0kb upstream 2.0kb upstream 11401 true scaffold_6: 30570407-30581807 Setaria italica
Seita.6G181200 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 30570407-30572406 Setaria italica
Seita.6G181200 2.0kb downstream 2.0kb downstream 11401 true scaffold_6: 30572407-30583807 Setaria italica
Seita.6G181200 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 30581808-30583807 Setaria italica
Seita.6G181200 5.0kb upstream 5.0kb upstream 14401 true scaffold_6: 30567407-30581807 Setaria italica
Seita.6G181200 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 30567407-30572406 Setaria italica
Seita.6G181200 5.0kb downstream 5.0kb downstream 14401 true scaffold_6: 30572407-30586807 Setaria italica
Seita.6G181200 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 30581808-30586807 Setaria italica
Seita.6G181200 10.0kb upstream 10.0kb upstream 19401 true scaffold_6: 30562407-30581807 Setaria italica
Seita.6G181200 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 30562407-30572406 Setaria italica
Seita.6G181200 10.0kb downstream 10.0kb downstream 19401 true scaffold_6: 30572407-30591807 Setaria italica
Seita.6G181200 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 30581808-30591807 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194767 5267 Panicoideae View MSA
124575674 5269 Grass View MSA
122045550 5273 Angiosperm View MSA
121349778 5274 Embryophyte View MSA
123427537 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.629        
cufflinks 3.262        
cufflinks 2.266        
cufflinks 2.37        
cufflinks 1.716       Low
cufflinks 2.994        
cufflinks 2.214       Low
cufflinks 2.763        
cufflinks 2.03       Low
cufflinks 4.137        
cufflinks 3.543        
cufflinks 4.615       High
cufflinks 4.515       High
cufflinks 2.448        
cufflinks 4.814       High
cufflinks 2.388        
cufflinks 4.094        
cufflinks 4.089        
cufflinks 2.166       Low
cufflinks 4.178        

0 Strain