Gene : Seita.6G185100 S. italica v2.2
Defline:  (1 of 27) PF03479 - Domain of unknown function (DUF296) (DUF296) Genomic Order:  1851
Name:  ? Seita.6G185100 Secondary Identifier:  ? PAC:32701244
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G185100 0.5kb upstream 0.5kb upstream 6708 true scaffold_6: 30894266-30900973 Setaria italica
Seita.6G185100 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 30900474-30900973 Setaria italica
Seita.6G185100 0.5kb downstream 0.5kb downstream 6708 true scaffold_6: 30893766-30900473 Setaria italica
Seita.6G185100 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 30893766-30894265 Setaria italica
Seita.6G185100 1.0kb upstream 1.0kb upstream 7208 true scaffold_6: 30894266-30901473 Setaria italica
Seita.6G185100 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 30900474-30901473 Setaria italica
Seita.6G185100 1.0kb downstream 1.0kb downstream 7208 true scaffold_6: 30893266-30900473 Setaria italica
Seita.6G185100 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 30893266-30894265 Setaria italica
Seita.6G185100 2.0kb upstream 2.0kb upstream 8208 true scaffold_6: 30894266-30902473 Setaria italica
Seita.6G185100 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 30900474-30902473 Setaria italica
Seita.6G185100 2.0kb downstream 2.0kb downstream 8208 true scaffold_6: 30892266-30900473 Setaria italica
Seita.6G185100 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 30892266-30894265 Setaria italica
Seita.6G185100 5.0kb upstream 5.0kb upstream 11208 true scaffold_6: 30894266-30905473 Setaria italica
Seita.6G185100 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 30900474-30905473 Setaria italica
Seita.6G185100 5.0kb downstream 5.0kb downstream 11208 true scaffold_6: 30889266-30900473 Setaria italica
Seita.6G185100 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 30889266-30894265 Setaria italica
Seita.6G185100 10.0kb upstream 10.0kb upstream 16208 true scaffold_6: 30894266-30910473 Setaria italica
Seita.6G185100 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 30900474-30910473 Setaria italica
Seita.6G185100 10.0kb downstream 10.0kb downstream 16208 true scaffold_6: 30884266-30900473 Setaria italica
Seita.6G185100 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 30884266-30894265 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185775 5267 Panicoideae View MSA
124581161 5269 Grass View MSA
122046470 5273 Angiosperm View MSA
121310610 5274 Embryophyte View MSA
123348051 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.148       High
cufflinks 2.54        
cufflinks 1.231        
cufflinks 1.7        
cufflinks 1.728        
cufflinks 2.85        
cufflinks 2.485        
cufflinks 1.83        
cufflinks 1.403        
cufflinks 5.966       High
cufflinks 5.966       High
cufflinks 0.622        
cufflinks 0.7        
cufflinks 2.43        
cufflinks 0.152       Low
cufflinks 3.508        
cufflinks 0.21       Low
cufflinks 5.891       High
cufflinks 1.023        
cufflinks 0.188       Low

0 Strain