Gene : Seita.6G188700 S. italica v2.2
Defline:  (1 of 1) PTHR31307:SF17 - GENOMIC DNA, CHROMOSOME 3, TAC CLONE:K7P8 Genomic Order:  1887
Name:  ? Seita.6G188700 Secondary Identifier:  ? PAC:32701514
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G188700 0.5kb upstream 0.5kb upstream 2221 true scaffold_6: 31255275-31257495 Setaria italica
Seita.6G188700 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 31255275-31255774 Setaria italica
Seita.6G188700 0.5kb downstream 0.5kb downstream 2221 true scaffold_6: 31255775-31257995 Setaria italica
Seita.6G188700 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 31257496-31257995 Setaria italica
Seita.6G188700 1.0kb upstream 1.0kb upstream 2721 true scaffold_6: 31254775-31257495 Setaria italica
Seita.6G188700 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 31254775-31255774 Setaria italica
Seita.6G188700 1.0kb downstream 1.0kb downstream 2721 true scaffold_6: 31255775-31258495 Setaria italica
Seita.6G188700 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 31257496-31258495 Setaria italica
Seita.6G188700 2.0kb upstream 2.0kb upstream 3721 true scaffold_6: 31253775-31257495 Setaria italica
Seita.6G188700 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 31253775-31255774 Setaria italica
Seita.6G188700 2.0kb downstream 2.0kb downstream 3721 true scaffold_6: 31255775-31259495 Setaria italica
Seita.6G188700 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 31257496-31259495 Setaria italica
Seita.6G188700 5.0kb upstream 5.0kb upstream 6721 true scaffold_6: 31250775-31257495 Setaria italica
Seita.6G188700 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 31250775-31255774 Setaria italica
Seita.6G188700 5.0kb downstream 5.0kb downstream 6721 true scaffold_6: 31255775-31262495 Setaria italica
Seita.6G188700 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 31257496-31262495 Setaria italica
Seita.6G188700 10.0kb upstream 10.0kb upstream 11721 true scaffold_6: 31245775-31257495 Setaria italica
Seita.6G188700 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 31245775-31255774 Setaria italica
Seita.6G188700 10.0kb downstream 10.0kb downstream 11721 true scaffold_6: 31255775-31267495 Setaria italica
Seita.6G188700 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 31257496-31267495 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177075 5267 Panicoideae View MSA
124573144 5269 Grass View MSA
122048588 5273 Angiosperm View MSA
121351505 5274 Embryophyte View MSA
123382195 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.607        
cufflinks 6.178        
cufflinks 4.613        
cufflinks 6.495        
cufflinks 4.033        
cufflinks 8.158        
cufflinks 5.752        
cufflinks 6.614        
cufflinks 3.488       Low
cufflinks 14.504       High
cufflinks 3.613       Low
cufflinks 5.823        
cufflinks 3.678       Low
cufflinks 9.399       High
cufflinks 3.473       Low
cufflinks 7.364        
cufflinks 5.207        
cufflinks 9.824       High
cufflinks 4.772        
cufflinks 4.342        

0 Strain