Gene : Seita.6G188800 S. italica v2.2
Genomic Order:  1888 Name:  ? Seita.6G188800
Secondary Identifier:  ? PAC:32698539
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G188800 0.5kb upstream 0.5kb upstream 4273 true scaffold_6: 31257639-31261911 Setaria italica
Seita.6G188800 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 31257639-31258138 Setaria italica
Seita.6G188800 0.5kb downstream 0.5kb downstream 4273 true scaffold_6: 31258139-31262411 Setaria italica
Seita.6G188800 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 31261912-31262411 Setaria italica
Seita.6G188800 1.0kb upstream 1.0kb upstream 4773 true scaffold_6: 31257139-31261911 Setaria italica
Seita.6G188800 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 31257139-31258138 Setaria italica
Seita.6G188800 1.0kb downstream 1.0kb downstream 4773 true scaffold_6: 31258139-31262911 Setaria italica
Seita.6G188800 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 31261912-31262911 Setaria italica
Seita.6G188800 2.0kb upstream 2.0kb upstream 5773 true scaffold_6: 31256139-31261911 Setaria italica
Seita.6G188800 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 31256139-31258138 Setaria italica
Seita.6G188800 2.0kb downstream 2.0kb downstream 5773 true scaffold_6: 31258139-31263911 Setaria italica
Seita.6G188800 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 31261912-31263911 Setaria italica
Seita.6G188800 5.0kb upstream 5.0kb upstream 8773 true scaffold_6: 31253139-31261911 Setaria italica
Seita.6G188800 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 31253139-31258138 Setaria italica
Seita.6G188800 5.0kb downstream 5.0kb downstream 8773 true scaffold_6: 31258139-31266911 Setaria italica
Seita.6G188800 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 31261912-31266911 Setaria italica
Seita.6G188800 10.0kb upstream 10.0kb upstream 13773 true scaffold_6: 31248139-31261911 Setaria italica
Seita.6G188800 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 31248139-31258138 Setaria italica
Seita.6G188800 10.0kb downstream 10.0kb downstream 13773 true scaffold_6: 31258139-31271911 Setaria italica
Seita.6G188800 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 31261912-31271911 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026188 5273 Angiosperm View MSA
122189356 5267 Panicoideae View MSA
124583728 5269 Grass View MSA
121345010 5274 Embryophyte View MSA
123380138 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.164        
cufflinks 3.137        
cufflinks 2.839        
cufflinks 2.799        
cufflinks 4.021       High
cufflinks 2.757        
cufflinks 3.367        
cufflinks 5.481       High
cufflinks 6.316       High
cufflinks 1.478       Low
cufflinks 1.586       Low
cufflinks 1.797        
cufflinks 1.21       Low
cufflinks 3.523        
cufflinks 1.256       Low
cufflinks 3.237        
cufflinks 1.87        
cufflinks 2.202        
cufflinks 2.974        
cufflinks 1.768        

0 Strain