Gene : Seita.6G189200 S. italica v2.2
Defline:  (1 of 5) PTHR18952:SF100 - ALPHA CARBONIC ANHYDRASE 5 Genomic Order:  1892
Name:  ? Seita.6G189200 Secondary Identifier:  ? PAC:32701543
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CYANCAT-PWY Setaria italica pathologic  
Sitalica PWY-241 Setaria italica pathologic  
Sitalica PWY-7115 Setaria italica pathologic  
Sitalica PWY-7117 Setaria italica pathologic  
Sitalica PWYQT-4429 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G189200 0.5kb upstream 0.5kb upstream 2202 true scaffold_6: 31327748-31329949 Setaria italica
Seita.6G189200 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 31327748-31328247 Setaria italica
Seita.6G189200 0.5kb downstream 0.5kb downstream 2202 true scaffold_6: 31328248-31330449 Setaria italica
Seita.6G189200 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 31329950-31330449 Setaria italica
Seita.6G189200 1.0kb upstream 1.0kb upstream 2702 true scaffold_6: 31327248-31329949 Setaria italica
Seita.6G189200 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 31327248-31328247 Setaria italica
Seita.6G189200 1.0kb downstream 1.0kb downstream 2702 true scaffold_6: 31328248-31330949 Setaria italica
Seita.6G189200 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 31329950-31330949 Setaria italica
Seita.6G189200 2.0kb upstream 2.0kb upstream 3702 true scaffold_6: 31326248-31329949 Setaria italica
Seita.6G189200 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 31326248-31328247 Setaria italica
Seita.6G189200 2.0kb downstream 2.0kb downstream 3702 true scaffold_6: 31328248-31331949 Setaria italica
Seita.6G189200 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 31329950-31331949 Setaria italica
Seita.6G189200 5.0kb upstream 5.0kb upstream 6702 true scaffold_6: 31323248-31329949 Setaria italica
Seita.6G189200 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 31323248-31328247 Setaria italica
Seita.6G189200 5.0kb downstream 5.0kb downstream 6702 true scaffold_6: 31328248-31334949 Setaria italica
Seita.6G189200 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 31329950-31334949 Setaria italica
Seita.6G189200 10.0kb upstream 10.0kb upstream 11702 true scaffold_6: 31318248-31329949 Setaria italica
Seita.6G189200 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 31318248-31328247 Setaria italica
Seita.6G189200 10.0kb downstream 10.0kb downstream 11702 true scaffold_6: 31328248-31339949 Setaria italica
Seita.6G189200 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 31329950-31339949 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121894664 5273 Angiosperm View MSA
122192310 5267 Panicoideae View MSA
124466302 5269 Grass View MSA
121351630 5274 Embryophyte View MSA
123428273 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.089     Low  
cufflinks 27.616     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.104        
cufflinks 8.246       High
cufflinks 0.435        
cufflinks 0.46        
cufflinks 1.053        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.105     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low Low
cufflinks 0.035     Low  
cufflinks 0.017     Low  
cufflinks 0.01     Low Low

0 Strain