Gene : Seita.6G193600 S. italica v2.2
Defline:  (1 of 1) PTHR10774//PTHR10774:SF97 - EXTENDED SYNAPTOTAGMIN-RELATED Genomic Order:  1936
Name:  ? Seita.6G193600 Secondary Identifier:  ? PAC:32701306
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G193600 0.5kb upstream 0.5kb upstream 7860 true scaffold_6: 31652347-31660206 Setaria italica
Seita.6G193600 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 31652347-31652846 Setaria italica
Seita.6G193600 0.5kb downstream 0.5kb downstream 7860 true scaffold_6: 31652847-31660706 Setaria italica
Seita.6G193600 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 31660207-31660706 Setaria italica
Seita.6G193600 1.0kb upstream 1.0kb upstream 8360 true scaffold_6: 31651847-31660206 Setaria italica
Seita.6G193600 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 31651847-31652846 Setaria italica
Seita.6G193600 1.0kb downstream 1.0kb downstream 8360 true scaffold_6: 31652847-31661206 Setaria italica
Seita.6G193600 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 31660207-31661206 Setaria italica
Seita.6G193600 2.0kb upstream 2.0kb upstream 9360 true scaffold_6: 31650847-31660206 Setaria italica
Seita.6G193600 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 31650847-31652846 Setaria italica
Seita.6G193600 2.0kb downstream 2.0kb downstream 9360 true scaffold_6: 31652847-31662206 Setaria italica
Seita.6G193600 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 31660207-31662206 Setaria italica
Seita.6G193600 5.0kb upstream 5.0kb upstream 12360 true scaffold_6: 31647847-31660206 Setaria italica
Seita.6G193600 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 31647847-31652846 Setaria italica
Seita.6G193600 5.0kb downstream 5.0kb downstream 12360 true scaffold_6: 31652847-31665206 Setaria italica
Seita.6G193600 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 31660207-31665206 Setaria italica
Seita.6G193600 10.0kb upstream 10.0kb upstream 17360 true scaffold_6: 31642847-31660206 Setaria italica
Seita.6G193600 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 31642847-31652846 Setaria italica
Seita.6G193600 10.0kb downstream 10.0kb downstream 17360 true scaffold_6: 31652847-31670206 Setaria italica
Seita.6G193600 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 31660207-31670206 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188936 5267 Panicoideae View MSA
124575327 5269 Grass View MSA
122044186 5273 Angiosperm View MSA
121350183 5274 Embryophyte View MSA
123381609 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.326        
cufflinks 4.114        
cufflinks 3.698        
cufflinks 2.915        
cufflinks 2.866        
cufflinks 3.951        
cufflinks 4.338        
cufflinks 1.909       Low
cufflinks 2.102       Low
cufflinks 3.486        
cufflinks 5.562        
cufflinks 15.331     High High
cufflinks 11.039       High
cufflinks 4.175        
cufflinks 15.027     High High
cufflinks 3.721        
cufflinks 8.983        
cufflinks 6.906        
cufflinks 2.888        
cufflinks 13.31       High

0 Strain