Gene : Seita.6G194600 S. italica v2.2
Defline:  (1 of 1) PTHR22847:SF447 - ELONGATOR COMPLEX PROTEIN 2 Genomic Order:  1946
Name:  ? Seita.6G194600 Secondary Identifier:  ? PAC:32699529
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G194600 0.5kb upstream 0.5kb upstream 5696 true scaffold_6: 31700741-31706436 Setaria italica
Seita.6G194600 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 31700741-31701240 Setaria italica
Seita.6G194600 0.5kb downstream 0.5kb downstream 5696 true scaffold_6: 31701241-31706936 Setaria italica
Seita.6G194600 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 31706437-31706936 Setaria italica
Seita.6G194600 1.0kb upstream 1.0kb upstream 6196 true scaffold_6: 31700241-31706436 Setaria italica
Seita.6G194600 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 31700241-31701240 Setaria italica
Seita.6G194600 1.0kb downstream 1.0kb downstream 6196 true scaffold_6: 31701241-31707436 Setaria italica
Seita.6G194600 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 31706437-31707436 Setaria italica
Seita.6G194600 2.0kb upstream 2.0kb upstream 7196 true scaffold_6: 31699241-31706436 Setaria italica
Seita.6G194600 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 31699241-31701240 Setaria italica
Seita.6G194600 2.0kb downstream 2.0kb downstream 7196 true scaffold_6: 31701241-31708436 Setaria italica
Seita.6G194600 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 31706437-31708436 Setaria italica
Seita.6G194600 5.0kb upstream 5.0kb upstream 10196 true scaffold_6: 31696241-31706436 Setaria italica
Seita.6G194600 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 31696241-31701240 Setaria italica
Seita.6G194600 5.0kb downstream 5.0kb downstream 10196 true scaffold_6: 31701241-31711436 Setaria italica
Seita.6G194600 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 31706437-31711436 Setaria italica
Seita.6G194600 10.0kb upstream 10.0kb upstream 15196 true scaffold_6: 31691241-31706436 Setaria italica
Seita.6G194600 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 31691241-31701240 Setaria italica
Seita.6G194600 10.0kb downstream 10.0kb downstream 15196 true scaffold_6: 31701241-31716436 Setaria italica
Seita.6G194600 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 31706437-31716436 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186166 5267 Panicoideae View MSA
124573505 5269 Grass View MSA
122046472 5273 Angiosperm View MSA
121347119 5274 Embryophyte View MSA
123427316 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.865        
cufflinks 8.797        
cufflinks 6.822        
cufflinks 4.044       Low
cufflinks 5.071        
cufflinks 8.305        
cufflinks 6.788        
cufflinks 4.555       Low
cufflinks 7.605        
cufflinks 5.374        
cufflinks 9.143       High
cufflinks 5.866        
cufflinks 4.288       Low
cufflinks 8.895        
cufflinks 7.741        
cufflinks 9.453       High
cufflinks 6.456        
cufflinks 10.768       High
cufflinks 4.447       Low
cufflinks 6.012        

0 Strain