Gene : Seita.6G197500 S. italica v2.2
Defline:  (1 of 2) 2.1.1.104//2.1.1.175//2.1.1.267 - Caffeoyl-CoA O-methyltransferase / Trans-caffeoyl-CoA 3-O-methyltransferase // Genomic Order:  1975
Name:  ? Seita.6G197500 Secondary Identifier:  ? PAC:32699128
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-1121 Setaria italica pathologic  
Sitalica PWY-361 Setaria italica pathologic  
Sitalica PWY-5391 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G197500 0.5kb upstream 0.5kb upstream 1576 true scaffold_6: 31909836-31911411 Setaria italica
Seita.6G197500 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 31910912-31911411 Setaria italica
Seita.6G197500 0.5kb downstream 0.5kb downstream 1576 true scaffold_6: 31909336-31910911 Setaria italica
Seita.6G197500 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 31909336-31909835 Setaria italica
Seita.6G197500 1.0kb upstream 1.0kb upstream 2076 true scaffold_6: 31909836-31911911 Setaria italica
Seita.6G197500 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 31910912-31911911 Setaria italica
Seita.6G197500 1.0kb downstream 1.0kb downstream 2076 true scaffold_6: 31908836-31910911 Setaria italica
Seita.6G197500 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 31908836-31909835 Setaria italica
Seita.6G197500 2.0kb upstream 2.0kb upstream 3076 true scaffold_6: 31909836-31912911 Setaria italica
Seita.6G197500 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 31910912-31912911 Setaria italica
Seita.6G197500 2.0kb downstream 2.0kb downstream 3076 true scaffold_6: 31907836-31910911 Setaria italica
Seita.6G197500 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 31907836-31909835 Setaria italica
Seita.6G197500 5.0kb upstream 5.0kb upstream 6076 true scaffold_6: 31909836-31915911 Setaria italica
Seita.6G197500 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 31910912-31915911 Setaria italica
Seita.6G197500 5.0kb downstream 5.0kb downstream 6076 true scaffold_6: 31904836-31910911 Setaria italica
Seita.6G197500 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 31904836-31909835 Setaria italica
Seita.6G197500 10.0kb upstream 10.0kb upstream 11076 true scaffold_6: 31909836-31920911 Setaria italica
Seita.6G197500 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 31910912-31920911 Setaria italica
Seita.6G197500 10.0kb downstream 10.0kb downstream 11076 true scaffold_6: 31899836-31910911 Setaria italica
Seita.6G197500 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 31899836-31909835 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187518 5267 Panicoideae View MSA
124575856 5269 Grass View MSA
122043643 5273 Angiosperm View MSA
121346702 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 130.218     High  
cufflinks 152.636     High  
cufflinks 85.317     High  
cufflinks 108.2     High  
cufflinks 50.655     High  
cufflinks 195.88     High  
cufflinks 90.8     High  
cufflinks 95.485     High  
cufflinks 83.254     High  
cufflinks 329.51     High High
cufflinks 322.888     High  
cufflinks 216.02     High  
cufflinks 401.371     High High
cufflinks 210.392     High  
cufflinks 321.823     High  
cufflinks 21.826     High Low
cufflinks 231.102     High  
cufflinks 13.068     High Low
cufflinks 52.096     High  
cufflinks 447.065     High High

0 Strain