Gene : Seita.6G197600 S. italica v2.2
Defline:  (1 of 2) 2.1.1.104//2.1.1.175//2.1.1.267 - Caffeoyl-CoA O-methyltransferase / Trans-caffeoyl-CoA 3-O-methyltransferase // Genomic Order:  1976
Name:  ? Seita.6G197600 Secondary Identifier:  ? PAC:32701466
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-1121 Setaria italica pathologic  
Sitalica PWY-361 Setaria italica pathologic  
Sitalica PWY-5391 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G197600 0.5kb upstream 0.5kb upstream 2280 true scaffold_6: 31917872-31920151 Setaria italica
Seita.6G197600 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 31919652-31920151 Setaria italica
Seita.6G197600 0.5kb downstream 0.5kb downstream 2280 true scaffold_6: 31917372-31919651 Setaria italica
Seita.6G197600 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 31917372-31917871 Setaria italica
Seita.6G197600 1.0kb upstream 1.0kb upstream 2780 true scaffold_6: 31917872-31920651 Setaria italica
Seita.6G197600 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 31919652-31920651 Setaria italica
Seita.6G197600 1.0kb downstream 1.0kb downstream 2780 true scaffold_6: 31916872-31919651 Setaria italica
Seita.6G197600 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 31916872-31917871 Setaria italica
Seita.6G197600 2.0kb upstream 2.0kb upstream 3780 true scaffold_6: 31917872-31921651 Setaria italica
Seita.6G197600 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 31919652-31921651 Setaria italica
Seita.6G197600 2.0kb downstream 2.0kb downstream 3780 true scaffold_6: 31915872-31919651 Setaria italica
Seita.6G197600 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 31915872-31917871 Setaria italica
Seita.6G197600 5.0kb upstream 5.0kb upstream 6780 true scaffold_6: 31917872-31924651 Setaria italica
Seita.6G197600 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 31919652-31924651 Setaria italica
Seita.6G197600 5.0kb downstream 5.0kb downstream 6780 true scaffold_6: 31912872-31919651 Setaria italica
Seita.6G197600 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 31912872-31917871 Setaria italica
Seita.6G197600 10.0kb upstream 10.0kb upstream 11780 true scaffold_6: 31917872-31929651 Setaria italica
Seita.6G197600 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 31919652-31929651 Setaria italica
Seita.6G197600 10.0kb downstream 10.0kb downstream 11780 true scaffold_6: 31907872-31919651 Setaria italica
Seita.6G197600 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 31907872-31917871 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186911 5267 Panicoideae View MSA
124465889 5269 Grass View MSA
122043643 5273 Angiosperm View MSA
121346702 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.011     Low  
cufflinks 0.01     Low  
cufflinks 0.089        
cufflinks 0.031     Low  
cufflinks 0.041     Low  
cufflinks 0.021     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 3.956       High
cufflinks 0.012     Low  
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.047     Low  
cufflinks 0.018     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.051     Low  
cufflinks 0.01     Low  
cufflinks 0.016     Low  
cufflinks 0.038     Low  

0 Strain