Gene : Seita.6G199400 S. italica v2.2
Defline:  (1 of 1) PTHR10130 - PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 Genomic Order:  1994
Name:  ? Seita.6G199400 Secondary Identifier:  ? PAC:32699282
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G199400 0.5kb upstream 0.5kb upstream 8659 true scaffold_6: 32029774-32038432 Setaria italica
Seita.6G199400 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 32029774-32030273 Setaria italica
Seita.6G199400 0.5kb downstream 0.5kb downstream 8659 true scaffold_6: 32030274-32038932 Setaria italica
Seita.6G199400 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 32038433-32038932 Setaria italica
Seita.6G199400 1.0kb upstream 1.0kb upstream 9159 true scaffold_6: 32029274-32038432 Setaria italica
Seita.6G199400 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 32029274-32030273 Setaria italica
Seita.6G199400 1.0kb downstream 1.0kb downstream 9159 true scaffold_6: 32030274-32039432 Setaria italica
Seita.6G199400 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 32038433-32039432 Setaria italica
Seita.6G199400 2.0kb upstream 2.0kb upstream 10159 true scaffold_6: 32028274-32038432 Setaria italica
Seita.6G199400 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 32028274-32030273 Setaria italica
Seita.6G199400 2.0kb downstream 2.0kb downstream 10159 true scaffold_6: 32030274-32040432 Setaria italica
Seita.6G199400 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 32038433-32040432 Setaria italica
Seita.6G199400 5.0kb upstream 5.0kb upstream 13159 true scaffold_6: 32025274-32038432 Setaria italica
Seita.6G199400 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 32025274-32030273 Setaria italica
Seita.6G199400 5.0kb downstream 5.0kb downstream 13159 true scaffold_6: 32030274-32043432 Setaria italica
Seita.6G199400 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 32038433-32043432 Setaria italica
Seita.6G199400 10.0kb upstream 10.0kb upstream 18159 true scaffold_6: 32020274-32038432 Setaria italica
Seita.6G199400 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 32020274-32030273 Setaria italica
Seita.6G199400 10.0kb downstream 10.0kb downstream 18159 true scaffold_6: 32030274-32048432 Setaria italica
Seita.6G199400 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 32038433-32048432 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122043170 5273 Angiosperm View MSA
122188384 5267 Panicoideae View MSA
124576148 5269 Grass View MSA
121345209 5274 Embryophyte View MSA
123423857 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.503        
cufflinks 5.581        
cufflinks 10.048       High
cufflinks 11.009     High High
cufflinks 7.812        
cufflinks 4.955       Low
cufflinks 5.49        
cufflinks 6.072        
cufflinks 6.103        
cufflinks 4.009       Low
cufflinks 6.645        
cufflinks 6.967        
cufflinks 8.016        
cufflinks 8.274        
cufflinks 6.938        
cufflinks 6.464        
cufflinks 5.977        
cufflinks 9.467       High
cufflinks 8.725        
cufflinks 6.498        

0 Strain