Gene : Seita.6G199600 S. italica v2.2
Defline:  (1 of 1) PTHR13832:SF286 - PROTEIN PHOSPHATASE 2C 33-RELATED Genomic Order:  1996
Name:  ? Seita.6G199600 Secondary Identifier:  ? PAC:32699320
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G199600 0.5kb upstream 0.5kb upstream 5070 true scaffold_6: 32045955-32051024 Setaria italica
Seita.6G199600 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 32050525-32051024 Setaria italica
Seita.6G199600 0.5kb downstream 0.5kb downstream 5070 true scaffold_6: 32045455-32050524 Setaria italica
Seita.6G199600 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 32045455-32045954 Setaria italica
Seita.6G199600 1.0kb upstream 1.0kb upstream 5570 true scaffold_6: 32045955-32051524 Setaria italica
Seita.6G199600 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 32050525-32051524 Setaria italica
Seita.6G199600 1.0kb downstream 1.0kb downstream 5570 true scaffold_6: 32044955-32050524 Setaria italica
Seita.6G199600 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 32044955-32045954 Setaria italica
Seita.6G199600 2.0kb upstream 2.0kb upstream 6570 true scaffold_6: 32045955-32052524 Setaria italica
Seita.6G199600 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 32050525-32052524 Setaria italica
Seita.6G199600 2.0kb downstream 2.0kb downstream 6570 true scaffold_6: 32043955-32050524 Setaria italica
Seita.6G199600 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 32043955-32045954 Setaria italica
Seita.6G199600 5.0kb upstream 5.0kb upstream 9570 true scaffold_6: 32045955-32055524 Setaria italica
Seita.6G199600 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 32050525-32055524 Setaria italica
Seita.6G199600 5.0kb downstream 5.0kb downstream 9570 true scaffold_6: 32040955-32050524 Setaria italica
Seita.6G199600 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 32040955-32045954 Setaria italica
Seita.6G199600 10.0kb upstream 10.0kb upstream 14570 true scaffold_6: 32045955-32060524 Setaria italica
Seita.6G199600 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 32050525-32060524 Setaria italica
Seita.6G199600 10.0kb downstream 10.0kb downstream 14570 true scaffold_6: 32035955-32050524 Setaria italica
Seita.6G199600 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 32035955-32045954 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188178 5267 Panicoideae View MSA
124578966 5269 Grass View MSA
122043983 5273 Angiosperm View MSA
121350683 5274 Embryophyte View MSA
123426661 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.176        
cufflinks 11.273       High
cufflinks 8.362        
cufflinks 8.781        
cufflinks 6.74        
cufflinks 11.374       High
cufflinks 9.807        
cufflinks 6.174       Low
cufflinks 9.399        
cufflinks 6.05       Low
cufflinks 7.483        
cufflinks 10.481        
cufflinks 14.082     High High
cufflinks 4.319       Low
cufflinks 7.555        
cufflinks 10.29        
cufflinks 11.07        
cufflinks 5.877       Low
cufflinks 6.49        
cufflinks 7.687        

0 Strain