Gene : Seita.6G198900 S. italica v2.2
Defline:  (1 of 1) PTHR10540:SF8 - COP9 SIGNALOSOME COMPLEX SUBUNIT 6 Genomic Order:  1989
Name:  ? Seita.6G198900 Secondary Identifier:  ? PAC:32698700
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G198900 0.5kb upstream 0.5kb upstream 3982 true scaffold_6: 32004329-32008310 Setaria italica
Seita.6G198900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 32007811-32008310 Setaria italica
Seita.6G198900 0.5kb downstream 0.5kb downstream 3982 true scaffold_6: 32003829-32007810 Setaria italica
Seita.6G198900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 32003829-32004328 Setaria italica
Seita.6G198900 1.0kb upstream 1.0kb upstream 4482 true scaffold_6: 32004329-32008810 Setaria italica
Seita.6G198900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 32007811-32008810 Setaria italica
Seita.6G198900 1.0kb downstream 1.0kb downstream 4482 true scaffold_6: 32003329-32007810 Setaria italica
Seita.6G198900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 32003329-32004328 Setaria italica
Seita.6G198900 2.0kb upstream 2.0kb upstream 5482 true scaffold_6: 32004329-32009810 Setaria italica
Seita.6G198900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 32007811-32009810 Setaria italica
Seita.6G198900 2.0kb downstream 2.0kb downstream 5482 true scaffold_6: 32002329-32007810 Setaria italica
Seita.6G198900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 32002329-32004328 Setaria italica
Seita.6G198900 5.0kb upstream 5.0kb upstream 8482 true scaffold_6: 32004329-32012810 Setaria italica
Seita.6G198900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 32007811-32012810 Setaria italica
Seita.6G198900 5.0kb downstream 5.0kb downstream 8482 true scaffold_6: 31999329-32007810 Setaria italica
Seita.6G198900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 31999329-32004328 Setaria italica
Seita.6G198900 10.0kb upstream 10.0kb upstream 13482 true scaffold_6: 32004329-32017810 Setaria italica
Seita.6G198900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 32007811-32017810 Setaria italica
Seita.6G198900 10.0kb downstream 10.0kb downstream 13482 true scaffold_6: 31994329-32007810 Setaria italica
Seita.6G198900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 31994329-32004328 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195265 5267 Panicoideae View MSA
124578831 5269 Grass View MSA
122050330 5273 Angiosperm View MSA
121345331 5274 Embryophyte View MSA
123424156 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.242        
cufflinks 7.451       High
cufflinks 2.329       Low
cufflinks 2.018       Low
cufflinks 2.885        
cufflinks 7.621       High
cufflinks 3.961        
cufflinks 5.868        
cufflinks 4.97        
cufflinks 6.625       High
cufflinks 4.669        
cufflinks 4.509        
cufflinks 3.971        
cufflinks 3.044        
cufflinks 5.051        
cufflinks 2.439       Low
cufflinks 5.21        
cufflinks 2.153       Low
cufflinks 2.604       Low
cufflinks 5.431        

0 Strain