Gene : Seita.6G202400 S. italica v2.2
Defline:  (1 of 1) 2.6.1.45 - Serine--glyoxylate transaminase / SGAT Genomic Order:  2024
Name:  ? Seita.6G202400 Secondary Identifier:  ? PAC:32699712
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica GLYSYN-ALA-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G202400 0.5kb upstream 0.5kb upstream 3672 true scaffold_6: 32233014-32236685 Setaria italica
Seita.6G202400 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 32236186-32236685 Setaria italica
Seita.6G202400 0.5kb downstream 0.5kb downstream 3672 true scaffold_6: 32232514-32236185 Setaria italica
Seita.6G202400 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 32232514-32233013 Setaria italica
Seita.6G202400 1.0kb upstream 1.0kb upstream 4172 true scaffold_6: 32233014-32237185 Setaria italica
Seita.6G202400 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 32236186-32237185 Setaria italica
Seita.6G202400 1.0kb downstream 1.0kb downstream 4172 true scaffold_6: 32232014-32236185 Setaria italica
Seita.6G202400 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 32232014-32233013 Setaria italica
Seita.6G202400 2.0kb upstream 2.0kb upstream 5172 true scaffold_6: 32233014-32238185 Setaria italica
Seita.6G202400 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 32236186-32238185 Setaria italica
Seita.6G202400 2.0kb downstream 2.0kb downstream 5172 true scaffold_6: 32231014-32236185 Setaria italica
Seita.6G202400 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 32231014-32233013 Setaria italica
Seita.6G202400 5.0kb upstream 5.0kb upstream 8172 true scaffold_6: 32233014-32241185 Setaria italica
Seita.6G202400 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 32236186-32241185 Setaria italica
Seita.6G202400 5.0kb downstream 5.0kb downstream 8172 true scaffold_6: 32228014-32236185 Setaria italica
Seita.6G202400 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 32228014-32233013 Setaria italica
Seita.6G202400 10.0kb upstream 10.0kb upstream 13172 true scaffold_6: 32233014-32246185 Setaria italica
Seita.6G202400 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 32236186-32246185 Setaria italica
Seita.6G202400 10.0kb downstream 10.0kb downstream 13172 true scaffold_6: 32223014-32236185 Setaria italica
Seita.6G202400 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 32223014-32233013 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176792 5267 Panicoideae View MSA
124575339 5269 Grass View MSA
122044965 5273 Angiosperm View MSA
121345609 5274 Embryophyte View MSA
123427199 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.227        
cufflinks 9.077        
cufflinks 74.728     High  
cufflinks 83.739     High High
cufflinks 63.369     High  
cufflinks 5.466        
cufflinks 24.828     High  
cufflinks 37.228     High  
cufflinks 26.855     High  
cufflinks 3.207        
cufflinks 2.253        
cufflinks 3.462        
cufflinks 2.469        
cufflinks 71.235     High  
cufflinks 0.161       Low
cufflinks 46.058     High  
cufflinks 0.59       Low
cufflinks 71.916     High  
cufflinks 35.681     High  
cufflinks 0.035     Low Low

0 Strain