Gene : Seita.6G204600 S. italica v2.2
Defline:  (1 of 1) 2.1.1.207 - tRNA (cytidine(34)-2'-O)-methyltransferase / tRNA methyltransferase L Genomic Order:  2046
Name:  ? Seita.6G204600 Secondary Identifier:  ? PAC:32701137
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G204600 0.5kb upstream 0.5kb upstream 3868 true scaffold_6: 32429492-32433359 Setaria italica
Seita.6G204600 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 32432860-32433359 Setaria italica
Seita.6G204600 0.5kb downstream 0.5kb downstream 3868 true scaffold_6: 32428992-32432859 Setaria italica
Seita.6G204600 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 32428992-32429491 Setaria italica
Seita.6G204600 1.0kb upstream 1.0kb upstream 4368 true scaffold_6: 32429492-32433859 Setaria italica
Seita.6G204600 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 32432860-32433859 Setaria italica
Seita.6G204600 1.0kb downstream 1.0kb downstream 4368 true scaffold_6: 32428492-32432859 Setaria italica
Seita.6G204600 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 32428492-32429491 Setaria italica
Seita.6G204600 2.0kb upstream 2.0kb upstream 5368 true scaffold_6: 32429492-32434859 Setaria italica
Seita.6G204600 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 32432860-32434859 Setaria italica
Seita.6G204600 2.0kb downstream 2.0kb downstream 5368 true scaffold_6: 32427492-32432859 Setaria italica
Seita.6G204600 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 32427492-32429491 Setaria italica
Seita.6G204600 5.0kb upstream 5.0kb upstream 8368 true scaffold_6: 32429492-32437859 Setaria italica
Seita.6G204600 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 32432860-32437859 Setaria italica
Seita.6G204600 5.0kb downstream 5.0kb downstream 8368 true scaffold_6: 32424492-32432859 Setaria italica
Seita.6G204600 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 32424492-32429491 Setaria italica
Seita.6G204600 10.0kb upstream 10.0kb upstream 13368 true scaffold_6: 32429492-32442859 Setaria italica
Seita.6G204600 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 32432860-32442859 Setaria italica
Seita.6G204600 10.0kb downstream 10.0kb downstream 13368 true scaffold_6: 32419492-32432859 Setaria italica
Seita.6G204600 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 32419492-32429491 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196865 5267 Panicoideae View MSA
124585629 5269 Grass View MSA
122045816 5273 Angiosperm View MSA
121345539 5274 Embryophyte View MSA
123426334 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.935        
cufflinks 1.744        
cufflinks 2.639        
cufflinks 1.427        
cufflinks 2.367        
cufflinks 1.537        
cufflinks 2.779        
cufflinks 5.069       High
cufflinks 5.896       High
cufflinks 1.743        
cufflinks 1.422        
cufflinks 0.784       Low
cufflinks 0.407       Low
cufflinks 6.963       High
cufflinks 0.75       Low
cufflinks 2.182        
cufflinks 0.77       Low
cufflinks 2.027        
cufflinks 0.847        
cufflinks 0.803       Low

0 Strain