Gene : Seita.6G210800 S. italica v2.2
Defline:  (1 of 5) PF12056 - Protein of unknown function (DUF3537) (DUF3537) Genomic Order:  2108
Name:  ? Seita.6G210800 Secondary Identifier:  ? PAC:32700848
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G210800 0.5kb upstream 0.5kb upstream 2187 true scaffold_6: 32879525-32881711 Setaria italica
Seita.6G210800 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 32879525-32880024 Setaria italica
Seita.6G210800 0.5kb downstream 0.5kb downstream 2187 true scaffold_6: 32880025-32882211 Setaria italica
Seita.6G210800 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 32881712-32882211 Setaria italica
Seita.6G210800 1.0kb upstream 1.0kb upstream 2687 true scaffold_6: 32879025-32881711 Setaria italica
Seita.6G210800 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 32879025-32880024 Setaria italica
Seita.6G210800 1.0kb downstream 1.0kb downstream 2687 true scaffold_6: 32880025-32882711 Setaria italica
Seita.6G210800 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 32881712-32882711 Setaria italica
Seita.6G210800 2.0kb upstream 2.0kb upstream 3687 true scaffold_6: 32878025-32881711 Setaria italica
Seita.6G210800 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 32878025-32880024 Setaria italica
Seita.6G210800 2.0kb downstream 2.0kb downstream 3687 true scaffold_6: 32880025-32883711 Setaria italica
Seita.6G210800 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 32881712-32883711 Setaria italica
Seita.6G210800 5.0kb upstream 5.0kb upstream 6687 true scaffold_6: 32875025-32881711 Setaria italica
Seita.6G210800 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 32875025-32880024 Setaria italica
Seita.6G210800 5.0kb downstream 5.0kb downstream 6687 true scaffold_6: 32880025-32886711 Setaria italica
Seita.6G210800 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 32881712-32886711 Setaria italica
Seita.6G210800 10.0kb upstream 10.0kb upstream 11687 true scaffold_6: 32870025-32881711 Setaria italica
Seita.6G210800 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 32870025-32880024 Setaria italica
Seita.6G210800 10.0kb downstream 10.0kb downstream 11687 true scaffold_6: 32880025-32891711 Setaria italica
Seita.6G210800 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 32881712-32891711 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186905 5267 Panicoideae View MSA
124588713 5269 Grass View MSA
122045087 5273 Angiosperm View MSA
121349766 5274 Embryophyte View MSA
123381435 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.168        
cufflinks 0.139        
cufflinks 0.353        
cufflinks 0.361        
cufflinks 0.644        
cufflinks 0.211        
cufflinks 0.599        
cufflinks 0.588        
cufflinks 0.445        
cufflinks 0.293     Low  
cufflinks 0.066     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low Low
cufflinks 0.444        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.927       High
cufflinks 0.02     Low Low
cufflinks 0.498        
cufflinks 0.561        
cufflinks 0.011     Low Low

0 Strain