Gene : Seita.6G125100 S. italica v2.2
Genomic Order:  1251 Name:  ? Seita.6G125100
Secondary Identifier:  ? PAC:32699207
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G125100 0.5kb upstream 0.5kb upstream 1307 true scaffold_6: 21450082-21451388 Setaria italica
Seita.6G125100 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 21450082-21450581 Setaria italica
Seita.6G125100 0.5kb downstream 0.5kb downstream 1307 true scaffold_6: 21450582-21451888 Setaria italica
Seita.6G125100 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 21451389-21451888 Setaria italica
Seita.6G125100 1.0kb upstream 1.0kb upstream 1807 true scaffold_6: 21449582-21451388 Setaria italica
Seita.6G125100 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 21449582-21450581 Setaria italica
Seita.6G125100 1.0kb downstream 1.0kb downstream 1807 true scaffold_6: 21450582-21452388 Setaria italica
Seita.6G125100 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 21451389-21452388 Setaria italica
Seita.6G125100 2.0kb upstream 2.0kb upstream 2807 true scaffold_6: 21448582-21451388 Setaria italica
Seita.6G125100 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 21448582-21450581 Setaria italica
Seita.6G125100 2.0kb downstream 2.0kb downstream 2807 true scaffold_6: 21450582-21453388 Setaria italica
Seita.6G125100 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 21451389-21453388 Setaria italica
Seita.6G125100 5.0kb upstream 5.0kb upstream 5807 true scaffold_6: 21445582-21451388 Setaria italica
Seita.6G125100 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 21445582-21450581 Setaria italica
Seita.6G125100 5.0kb downstream 5.0kb downstream 5807 true scaffold_6: 21450582-21456388 Setaria italica
Seita.6G125100 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 21451389-21456388 Setaria italica
Seita.6G125100 10.0kb upstream 10.0kb upstream 10807 true scaffold_6: 21440582-21451388 Setaria italica
Seita.6G125100 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 21440582-21450581 Setaria italica
Seita.6G125100 10.0kb downstream 10.0kb downstream 10807 true scaffold_6: 21450582-21461388 Setaria italica
Seita.6G125100 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 21451389-21461388 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188884 5267 Panicoideae View MSA
124579313 5269 Grass View MSA
122048753 5273 Angiosperm View MSA
121311096 5274 Embryophyte View MSA
123348442 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 4.818       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.27        
cufflinks 0.02     Low  
cufflinks 0.057     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.029     Low  
cufflinks 0.035     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low  

0 Strain