Gene : Seita.6G128600 S. italica v2.2
Defline:  (1 of 1) PTHR11695//PTHR11695:SF552 - ALCOHOL DEHYDROGENASE RELATED Genomic Order:  1286
Name:  ? Seita.6G128600 Secondary Identifier:  ? PAC:32698668
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G128600 0.5kb upstream 0.5kb upstream 2515 true scaffold_6: 22486501-22489015 Setaria italica
Seita.6G128600 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 22486501-22487000 Setaria italica
Seita.6G128600 0.5kb downstream 0.5kb downstream 2515 true scaffold_6: 22487001-22489515 Setaria italica
Seita.6G128600 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 22489016-22489515 Setaria italica
Seita.6G128600 1.0kb upstream 1.0kb upstream 3015 true scaffold_6: 22486001-22489015 Setaria italica
Seita.6G128600 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 22486001-22487000 Setaria italica
Seita.6G128600 1.0kb downstream 1.0kb downstream 3015 true scaffold_6: 22487001-22490015 Setaria italica
Seita.6G128600 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 22489016-22490015 Setaria italica
Seita.6G128600 2.0kb upstream 2.0kb upstream 4015 true scaffold_6: 22485001-22489015 Setaria italica
Seita.6G128600 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 22485001-22487000 Setaria italica
Seita.6G128600 2.0kb downstream 2.0kb downstream 4015 true scaffold_6: 22487001-22491015 Setaria italica
Seita.6G128600 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 22489016-22491015 Setaria italica
Seita.6G128600 5.0kb upstream 5.0kb upstream 7015 true scaffold_6: 22482001-22489015 Setaria italica
Seita.6G128600 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 22482001-22487000 Setaria italica
Seita.6G128600 5.0kb downstream 5.0kb downstream 7015 true scaffold_6: 22487001-22494015 Setaria italica
Seita.6G128600 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 22489016-22494015 Setaria italica
Seita.6G128600 10.0kb upstream 10.0kb upstream 12015 true scaffold_6: 22477001-22489015 Setaria italica
Seita.6G128600 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 22477001-22487000 Setaria italica
Seita.6G128600 10.0kb downstream 10.0kb downstream 12015 true scaffold_6: 22487001-22499015 Setaria italica
Seita.6G128600 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 22489016-22499015 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180642 5267 Panicoideae View MSA
124579612 5269 Grass View MSA
122050777 5273 Angiosperm View MSA
121345423 5274 Embryophyte View MSA
123428381 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.589        
cufflinks 7.742        
cufflinks 11.425     High  
cufflinks 10.417        
cufflinks 25.745     High  
cufflinks 8.143        
cufflinks 33.485     High  
cufflinks 30.141     High  
cufflinks 35.928     High  
cufflinks 5.685        
cufflinks 3.33        
cufflinks 0.099     Low Low
cufflinks 0.1     Low Low
cufflinks 13.866     High  
cufflinks 0.044     Low Low
cufflinks 38.177     High  
cufflinks 0.065     Low Low
cufflinks 4.306        
cufflinks 14.755     High  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain