Gene : Seita.6G129300 S. italica v2.2
Defline:  (1 of 8) 3.1.13.1 - Exoribonuclease II / Ribonuclease II Genomic Order:  1293
Name:  ? Seita.6G129300 Secondary Identifier:  ? PAC:32699840
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G129300 0.5kb upstream 0.5kb upstream 3318 true scaffold_6: 22572936-22576253 Setaria italica
Seita.6G129300 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 22572936-22573435 Setaria italica
Seita.6G129300 0.5kb downstream 0.5kb downstream 3318 true scaffold_6: 22573436-22576753 Setaria italica
Seita.6G129300 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 22576254-22576753 Setaria italica
Seita.6G129300 1.0kb upstream 1.0kb upstream 3818 true scaffold_6: 22572436-22576253 Setaria italica
Seita.6G129300 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 22572436-22573435 Setaria italica
Seita.6G129300 1.0kb downstream 1.0kb downstream 3818 true scaffold_6: 22573436-22577253 Setaria italica
Seita.6G129300 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 22576254-22577253 Setaria italica
Seita.6G129300 2.0kb upstream 2.0kb upstream 4818 true scaffold_6: 22571436-22576253 Setaria italica
Seita.6G129300 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 22571436-22573435 Setaria italica
Seita.6G129300 2.0kb downstream 2.0kb downstream 4818 true scaffold_6: 22573436-22578253 Setaria italica
Seita.6G129300 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 22576254-22578253 Setaria italica
Seita.6G129300 5.0kb upstream 5.0kb upstream 7818 true scaffold_6: 22568436-22576253 Setaria italica
Seita.6G129300 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 22568436-22573435 Setaria italica
Seita.6G129300 5.0kb downstream 5.0kb downstream 7818 true scaffold_6: 22573436-22581253 Setaria italica
Seita.6G129300 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 22576254-22581253 Setaria italica
Seita.6G129300 10.0kb upstream 10.0kb upstream 12818 true scaffold_6: 22563436-22576253 Setaria italica
Seita.6G129300 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 22563436-22573435 Setaria italica
Seita.6G129300 10.0kb downstream 10.0kb downstream 12818 true scaffold_6: 22573436-22586253 Setaria italica
Seita.6G129300 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 22576254-22586253 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178058 5267 Panicoideae View MSA
124576457 5269 Grass View MSA
122042636 5273 Angiosperm View MSA
121346020 5274 Embryophyte View MSA
123428502 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.747        
cufflinks 4.7       High
cufflinks 3.772        
cufflinks 2.781        
cufflinks 2.85        
cufflinks 4.619       High
cufflinks 2.821        
cufflinks 3.911        
cufflinks 3.607        
cufflinks 3.468        
cufflinks 2.736        
cufflinks 4.131        
cufflinks 2.743        
cufflinks 4.362        
cufflinks 4.107        
cufflinks 2.452       Low
cufflinks 5.385       High
cufflinks 2.989        
cufflinks 2.593       Low
cufflinks 4.48       High

0 Strain