Gene : Seita.6G127100 S. italica v2.2
Defline:  (1 of 7) PTHR10485 - MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM-17 Genomic Order:  1271
Name:  ? Seita.6G127100 Secondary Identifier:  ? PAC:32701606
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G127100 0.5kb upstream 0.5kb upstream 4084 true scaffold_6: 21824849-21828932 Setaria italica
Seita.6G127100 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 21828433-21828932 Setaria italica
Seita.6G127100 0.5kb downstream 0.5kb downstream 4084 true scaffold_6: 21824349-21828432 Setaria italica
Seita.6G127100 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 21824349-21824848 Setaria italica
Seita.6G127100 1.0kb upstream 1.0kb upstream 4584 true scaffold_6: 21824849-21829432 Setaria italica
Seita.6G127100 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 21828433-21829432 Setaria italica
Seita.6G127100 1.0kb downstream 1.0kb downstream 4584 true scaffold_6: 21823849-21828432 Setaria italica
Seita.6G127100 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 21823849-21824848 Setaria italica
Seita.6G127100 2.0kb upstream 2.0kb upstream 5584 true scaffold_6: 21824849-21830432 Setaria italica
Seita.6G127100 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 21828433-21830432 Setaria italica
Seita.6G127100 2.0kb downstream 2.0kb downstream 5584 true scaffold_6: 21822849-21828432 Setaria italica
Seita.6G127100 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 21822849-21824848 Setaria italica
Seita.6G127100 5.0kb upstream 5.0kb upstream 8584 true scaffold_6: 21824849-21833432 Setaria italica
Seita.6G127100 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 21828433-21833432 Setaria italica
Seita.6G127100 5.0kb downstream 5.0kb downstream 8584 true scaffold_6: 21819849-21828432 Setaria italica
Seita.6G127100 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 21819849-21824848 Setaria italica
Seita.6G127100 10.0kb upstream 10.0kb upstream 13584 true scaffold_6: 21824849-21838432 Setaria italica
Seita.6G127100 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 21828433-21838432 Setaria italica
Seita.6G127100 10.0kb downstream 10.0kb downstream 13584 true scaffold_6: 21814849-21828432 Setaria italica
Seita.6G127100 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 21814849-21824848 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177196 5267 Panicoideae View MSA
124589797 5269 Grass View MSA
122045727 5273 Angiosperm View MSA
121349022 5274 Embryophyte View MSA
123425450 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.33        
cufflinks 0.413        
cufflinks 0.218        
cufflinks 0.218        
cufflinks 0.37        
cufflinks 0.397        
cufflinks 0.579        
cufflinks 0.723       High
cufflinks 0.781       High
cufflinks 0.937       High
cufflinks 0.128     Low Low
cufflinks 0.264        
cufflinks 0.084     Low Low
cufflinks 0.477        
cufflinks 0.233        
cufflinks 0.346        
cufflinks 0.292        
cufflinks 0.259        
cufflinks 0.238        
cufflinks 0.291        

0 Strain