Gene : Seita.6G130100 S. italica v2.2
Defline:  (1 of 62) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1301
Name:  ? Seita.6G130100 Secondary Identifier:  ? PAC:32698586
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G130100 0.5kb upstream 0.5kb upstream 4803 true scaffold_6: 22636112-22640914 Setaria italica
Seita.6G130100 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 22640415-22640914 Setaria italica
Seita.6G130100 0.5kb downstream 0.5kb downstream 4803 true scaffold_6: 22635612-22640414 Setaria italica
Seita.6G130100 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 22635612-22636111 Setaria italica
Seita.6G130100 1.0kb upstream 1.0kb upstream 5303 true scaffold_6: 22636112-22641414 Setaria italica
Seita.6G130100 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 22640415-22641414 Setaria italica
Seita.6G130100 1.0kb downstream 1.0kb downstream 5303 true scaffold_6: 22635112-22640414 Setaria italica
Seita.6G130100 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 22635112-22636111 Setaria italica
Seita.6G130100 2.0kb upstream 2.0kb upstream 6303 true scaffold_6: 22636112-22642414 Setaria italica
Seita.6G130100 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 22640415-22642414 Setaria italica
Seita.6G130100 2.0kb downstream 2.0kb downstream 6303 true scaffold_6: 22634112-22640414 Setaria italica
Seita.6G130100 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 22634112-22636111 Setaria italica
Seita.6G130100 5.0kb upstream 5.0kb upstream 9303 true scaffold_6: 22636112-22645414 Setaria italica
Seita.6G130100 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 22640415-22645414 Setaria italica
Seita.6G130100 5.0kb downstream 5.0kb downstream 9303 true scaffold_6: 22631112-22640414 Setaria italica
Seita.6G130100 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 22631112-22636111 Setaria italica
Seita.6G130100 10.0kb upstream 10.0kb upstream 14303 true scaffold_6: 22636112-22650414 Setaria italica
Seita.6G130100 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 22640415-22650414 Setaria italica
Seita.6G130100 10.0kb downstream 10.0kb downstream 14303 true scaffold_6: 22626112-22640414 Setaria italica
Seita.6G130100 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 22626112-22636111 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026168 5273 Angiosperm View MSA
122191596 5267 Panicoideae View MSA
124576020 5269 Grass View MSA
121296211 5274 Embryophyte View MSA
123334413 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.403        
cufflinks 0.725       High
cufflinks 0.188        
cufflinks 0.06     Low Low
cufflinks 0.116       Low
cufflinks 0.671        
cufflinks 0.365        
cufflinks 0.298        
cufflinks 0.449        
cufflinks 0.57        
cufflinks 0.458        
cufflinks 0.456        
cufflinks 0.171     Low  
cufflinks 0.572        
cufflinks 0.546        
cufflinks 0.304        
cufflinks 0.871       High
cufflinks 0.264        
cufflinks 0.068     Low Low
cufflinks 0.466        

0 Strain