Gene : Seita.6G135900 S. italica v2.2
Defline:  (1 of 5) KOG0059 - Lipid exporter ABCA1 and related proteins, ABC superfamily Genomic Order:  1359
Name:  ? Seita.6G135900 Secondary Identifier:  ? PAC:32700786
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G135900 0.5kb upstream 0.5kb upstream 6796 true scaffold_6: 24351437-24358232 Setaria italica
Seita.6G135900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 24357733-24358232 Setaria italica
Seita.6G135900 0.5kb downstream 0.5kb downstream 6796 true scaffold_6: 24350937-24357732 Setaria italica
Seita.6G135900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 24350937-24351436 Setaria italica
Seita.6G135900 1.0kb upstream 1.0kb upstream 7296 true scaffold_6: 24351437-24358732 Setaria italica
Seita.6G135900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 24357733-24358732 Setaria italica
Seita.6G135900 1.0kb downstream 1.0kb downstream 7296 true scaffold_6: 24350437-24357732 Setaria italica
Seita.6G135900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 24350437-24351436 Setaria italica
Seita.6G135900 2.0kb upstream 2.0kb upstream 8296 true scaffold_6: 24351437-24359732 Setaria italica
Seita.6G135900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 24357733-24359732 Setaria italica
Seita.6G135900 2.0kb downstream 2.0kb downstream 8296 true scaffold_6: 24349437-24357732 Setaria italica
Seita.6G135900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 24349437-24351436 Setaria italica
Seita.6G135900 5.0kb upstream 5.0kb upstream 11296 true scaffold_6: 24351437-24362732 Setaria italica
Seita.6G135900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 24357733-24362732 Setaria italica
Seita.6G135900 5.0kb downstream 5.0kb downstream 11296 true scaffold_6: 24346437-24357732 Setaria italica
Seita.6G135900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 24346437-24351436 Setaria italica
Seita.6G135900 10.0kb upstream 10.0kb upstream 16296 true scaffold_6: 24351437-24367732 Setaria italica
Seita.6G135900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 24357733-24367732 Setaria italica
Seita.6G135900 10.0kb downstream 10.0kb downstream 16296 true scaffold_6: 24341437-24357732 Setaria italica
Seita.6G135900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 24341437-24351436 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188155 5267 Panicoideae View MSA
124576476 5269 Grass View MSA
122046360 5273 Angiosperm View MSA
123429075 5275 Viridiplantae View MSA
121347402 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.381        
cufflinks 14.37     High  
cufflinks 11.411     High  
cufflinks 10.664        
cufflinks 9.196        
cufflinks 13.056        
cufflinks 9.739        
cufflinks 6.095       Low
cufflinks 6.862       Low
cufflinks 18.195     High  
cufflinks 15.355     High  
cufflinks 246.032     High High
cufflinks 52.164     High High
cufflinks 10.587        
cufflinks 57.296     High High
cufflinks 11.479        
cufflinks 36.77     High  
cufflinks 23.115     High  
cufflinks 11.017        
cufflinks 53.841     High High

0 Strain