Gene : Seita.6G141500 S. italica v2.2
Defline:  (1 of 5) PTHR22847//PTHR22847:SF453 - WD40 REPEAT PROTEIN Genomic Order:  1415
Name:  ? Seita.6G141500 Secondary Identifier:  ? PAC:32701135
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G141500 0.5kb upstream 0.5kb upstream 7223 true scaffold_6: 25238484-25245706 Setaria italica
Seita.6G141500 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 25238484-25238983 Setaria italica
Seita.6G141500 0.5kb downstream 0.5kb downstream 7223 true scaffold_6: 25238984-25246206 Setaria italica
Seita.6G141500 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 25245707-25246206 Setaria italica
Seita.6G141500 1.0kb upstream 1.0kb upstream 7723 true scaffold_6: 25237984-25245706 Setaria italica
Seita.6G141500 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 25237984-25238983 Setaria italica
Seita.6G141500 1.0kb downstream 1.0kb downstream 7723 true scaffold_6: 25238984-25246706 Setaria italica
Seita.6G141500 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 25245707-25246706 Setaria italica
Seita.6G141500 2.0kb upstream 2.0kb upstream 8723 true scaffold_6: 25236984-25245706 Setaria italica
Seita.6G141500 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 25236984-25238983 Setaria italica
Seita.6G141500 2.0kb downstream 2.0kb downstream 8723 true scaffold_6: 25238984-25247706 Setaria italica
Seita.6G141500 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 25245707-25247706 Setaria italica
Seita.6G141500 5.0kb upstream 5.0kb upstream 11723 true scaffold_6: 25233984-25245706 Setaria italica
Seita.6G141500 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 25233984-25238983 Setaria italica
Seita.6G141500 5.0kb downstream 5.0kb downstream 11723 true scaffold_6: 25238984-25250706 Setaria italica
Seita.6G141500 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 25245707-25250706 Setaria italica
Seita.6G141500 10.0kb upstream 10.0kb upstream 16723 true scaffold_6: 25228984-25245706 Setaria italica
Seita.6G141500 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 25228984-25238983 Setaria italica
Seita.6G141500 10.0kb downstream 10.0kb downstream 16723 true scaffold_6: 25238984-25255706 Setaria italica
Seita.6G141500 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 25245707-25255706 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180183 5267 Panicoideae View MSA
124572509 5269 Grass View MSA
122045317 5273 Angiosperm View MSA
121348063 5274 Embryophyte View MSA
123428605 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.701        
cufflinks 6.303        
cufflinks 10.862     High  
cufflinks 13.196     High High
cufflinks 8.279        
cufflinks 6.044        
cufflinks 7.626        
cufflinks 5.355       Low
cufflinks 5.225       Low
cufflinks 6.387        
cufflinks 6.682        
cufflinks 10.63        
cufflinks 10.955       High
cufflinks 6.679        
cufflinks 7.714        
cufflinks 9.297        
cufflinks 7.276        
cufflinks 14.717     High High
cufflinks 12.086     High High
cufflinks 6.393        

0 Strain