Gene : Seita.6G145400 S. italica v2.2
Defline:  (1 of 5) PF11833 - Protein of unknown function (DUF3353) (DUF3353) Genomic Order:  1454
Name:  ? Seita.6G145400 Secondary Identifier:  ? PAC:32698635
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G145400 0.5kb upstream 0.5kb upstream 3709 true scaffold_6: 25908758-25912466 Setaria italica
Seita.6G145400 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 25908758-25909257 Setaria italica
Seita.6G145400 0.5kb downstream 0.5kb downstream 3709 true scaffold_6: 25909258-25912966 Setaria italica
Seita.6G145400 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 25912467-25912966 Setaria italica
Seita.6G145400 1.0kb upstream 1.0kb upstream 4209 true scaffold_6: 25908258-25912466 Setaria italica
Seita.6G145400 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 25908258-25909257 Setaria italica
Seita.6G145400 1.0kb downstream 1.0kb downstream 4209 true scaffold_6: 25909258-25913466 Setaria italica
Seita.6G145400 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 25912467-25913466 Setaria italica
Seita.6G145400 2.0kb upstream 2.0kb upstream 5209 true scaffold_6: 25907258-25912466 Setaria italica
Seita.6G145400 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 25907258-25909257 Setaria italica
Seita.6G145400 2.0kb downstream 2.0kb downstream 5209 true scaffold_6: 25909258-25914466 Setaria italica
Seita.6G145400 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 25912467-25914466 Setaria italica
Seita.6G145400 5.0kb upstream 5.0kb upstream 8209 true scaffold_6: 25904258-25912466 Setaria italica
Seita.6G145400 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 25904258-25909257 Setaria italica
Seita.6G145400 5.0kb downstream 5.0kb downstream 8209 true scaffold_6: 25909258-25917466 Setaria italica
Seita.6G145400 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 25912467-25917466 Setaria italica
Seita.6G145400 10.0kb upstream 10.0kb upstream 13209 true scaffold_6: 25899258-25912466 Setaria italica
Seita.6G145400 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 25899258-25909257 Setaria italica
Seita.6G145400 10.0kb downstream 10.0kb downstream 13209 true scaffold_6: 25909258-25922466 Setaria italica
Seita.6G145400 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 25912467-25922466 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182871 5267 Panicoideae View MSA
124574939 5269 Grass View MSA
122050900 5273 Angiosperm View MSA
121343809 5274 Embryophyte View MSA
123427732 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.431        
cufflinks 5.604        
cufflinks 6.109        
cufflinks 3.926       Low
cufflinks 5.981        
cufflinks 6.936        
cufflinks 8.915        
cufflinks 9.574       High
cufflinks 12.143       High
cufflinks 9.107        
cufflinks 5.593        
cufflinks 6.816        
cufflinks 5.721        
cufflinks 8.737        
cufflinks 6.819        
cufflinks 10.18       High
cufflinks 7.038        
cufflinks 8.585        
cufflinks 6.41        
cufflinks 5.708        

0 Strain