Gene : Seita.6G144300 S. italica v2.2
Defline:  (1 of 1) PTHR31332:SF0 - 7-HYDROXYMETHYL CHLOROPHYLL A REDUCTASE, CHLOROPLASTIC Genomic Order:  1443
Name:  ? Seita.6G144300 Secondary Identifier:  ? PAC:32699587
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5068 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G144300 0.5kb upstream 0.5kb upstream 4974 true scaffold_6: 25744895-25749868 Setaria italica
Seita.6G144300 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 25749369-25749868 Setaria italica
Seita.6G144300 0.5kb downstream 0.5kb downstream 4974 true scaffold_6: 25744395-25749368 Setaria italica
Seita.6G144300 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 25744395-25744894 Setaria italica
Seita.6G144300 1.0kb upstream 1.0kb upstream 5474 true scaffold_6: 25744895-25750368 Setaria italica
Seita.6G144300 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 25749369-25750368 Setaria italica
Seita.6G144300 1.0kb downstream 1.0kb downstream 5474 true scaffold_6: 25743895-25749368 Setaria italica
Seita.6G144300 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 25743895-25744894 Setaria italica
Seita.6G144300 2.0kb upstream 2.0kb upstream 6474 true scaffold_6: 25744895-25751368 Setaria italica
Seita.6G144300 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 25749369-25751368 Setaria italica
Seita.6G144300 2.0kb downstream 2.0kb downstream 6474 true scaffold_6: 25742895-25749368 Setaria italica
Seita.6G144300 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 25742895-25744894 Setaria italica
Seita.6G144300 5.0kb upstream 5.0kb upstream 9474 true scaffold_6: 25744895-25754368 Setaria italica
Seita.6G144300 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 25749369-25754368 Setaria italica
Seita.6G144300 5.0kb downstream 5.0kb downstream 9474 true scaffold_6: 25739895-25749368 Setaria italica
Seita.6G144300 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 25739895-25744894 Setaria italica
Seita.6G144300 10.0kb upstream 10.0kb upstream 14474 true scaffold_6: 25744895-25759368 Setaria italica
Seita.6G144300 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 25749369-25759368 Setaria italica
Seita.6G144300 10.0kb downstream 10.0kb downstream 14474 true scaffold_6: 25734895-25749368 Setaria italica
Seita.6G144300 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 25734895-25744894 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175562 5267 Panicoideae View MSA
124582983 5269 Grass View MSA
122042244 5273 Angiosperm View MSA
121347616 5274 Embryophyte View MSA
123428400 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.28     High  
cufflinks 14.578     High  
cufflinks 42.601     High  
cufflinks 32.448     High  
cufflinks 30.637     High  
cufflinks 16.395     High  
cufflinks 36.905     High  
cufflinks 35.956     High  
cufflinks 44.267     High  
cufflinks 15.938     High  
cufflinks 18.615     High  
cufflinks 2.745       Low
cufflinks 3.405       Low
cufflinks 23.927     High  
cufflinks 1.762       Low
cufflinks 59.12     High High
cufflinks 2.895       Low
cufflinks 54.17     High High
cufflinks 23.327     High  
cufflinks 2.493       Low

0 Strain