Gene : Seita.6G153000 S. italica v2.2
Defline:  (1 of 1) PTHR12135 - DNA REPAIR PROTEIN XP-C / RAD4 Genomic Order:  1530
Name:  ? Seita.6G153000 Secondary Identifier:  ? PAC:32698929
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G153000 0.5kb upstream 0.5kb upstream 6567 true scaffold_6: 27248604-27255170 Setaria italica
Seita.6G153000 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 27248604-27249103 Setaria italica
Seita.6G153000 0.5kb downstream 0.5kb downstream 6567 true scaffold_6: 27249104-27255670 Setaria italica
Seita.6G153000 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 27255171-27255670 Setaria italica
Seita.6G153000 1.0kb upstream 1.0kb upstream 7067 true scaffold_6: 27248104-27255170 Setaria italica
Seita.6G153000 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 27248104-27249103 Setaria italica
Seita.6G153000 1.0kb downstream 1.0kb downstream 7067 true scaffold_6: 27249104-27256170 Setaria italica
Seita.6G153000 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 27255171-27256170 Setaria italica
Seita.6G153000 2.0kb upstream 2.0kb upstream 8067 true scaffold_6: 27247104-27255170 Setaria italica
Seita.6G153000 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 27247104-27249103 Setaria italica
Seita.6G153000 2.0kb downstream 2.0kb downstream 8067 true scaffold_6: 27249104-27257170 Setaria italica
Seita.6G153000 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 27255171-27257170 Setaria italica
Seita.6G153000 5.0kb upstream 5.0kb upstream 11067 true scaffold_6: 27244104-27255170 Setaria italica
Seita.6G153000 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 27244104-27249103 Setaria italica
Seita.6G153000 5.0kb downstream 5.0kb downstream 11067 true scaffold_6: 27249104-27260170 Setaria italica
Seita.6G153000 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 27255171-27260170 Setaria italica
Seita.6G153000 10.0kb upstream 10.0kb upstream 16067 true scaffold_6: 27239104-27255170 Setaria italica
Seita.6G153000 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 27239104-27249103 Setaria italica
Seita.6G153000 10.0kb downstream 10.0kb downstream 16067 true scaffold_6: 27249104-27265170 Setaria italica
Seita.6G153000 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 27255171-27265170 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189996 5267 Panicoideae View MSA
124577970 5269 Grass View MSA
122049699 5273 Angiosperm View MSA
121347837 5274 Embryophyte View MSA
123425699 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.516       High
cufflinks 2.561       High
cufflinks 0.944        
cufflinks 0.823       Low
cufflinks 1.193        
cufflinks 2.777       High
cufflinks 1.95        
cufflinks 1.614        
cufflinks 1.923        
cufflinks 0.87       Low
cufflinks 1.796        
cufflinks 1.128        
cufflinks 1.241        
cufflinks 0.845       Low
cufflinks 1.138        
cufflinks 2.405       High
cufflinks 1.246        
cufflinks 1.697        
cufflinks 0.632       Low
cufflinks 1.237        

0 Strain