Gene : Seita.6G156600 S. italica v2.2
Defline:  (1 of 2) PTHR23151//PTHR23151:SF67 - DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED Genomic Order:  1566
Name:  ? Seita.6G156600 Secondary Identifier:  ? PAC:32701308
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5173 Setaria italica pathologic  
Sitalica PWY-5464 Setaria italica pathologic  
Sitalica PYRUVDEHYD-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G156600 0.5kb upstream 0.5kb upstream 3421 true scaffold_6: 27698771-27702191 Setaria italica
Seita.6G156600 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 27701692-27702191 Setaria italica
Seita.6G156600 0.5kb downstream 0.5kb downstream 3421 true scaffold_6: 27698271-27701691 Setaria italica
Seita.6G156600 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 27698271-27698770 Setaria italica
Seita.6G156600 1.0kb upstream 1.0kb upstream 3921 true scaffold_6: 27698771-27702691 Setaria italica
Seita.6G156600 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 27701692-27702691 Setaria italica
Seita.6G156600 1.0kb downstream 1.0kb downstream 3921 true scaffold_6: 27697771-27701691 Setaria italica
Seita.6G156600 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 27697771-27698770 Setaria italica
Seita.6G156600 2.0kb upstream 2.0kb upstream 4921 true scaffold_6: 27698771-27703691 Setaria italica
Seita.6G156600 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 27701692-27703691 Setaria italica
Seita.6G156600 2.0kb downstream 2.0kb downstream 4921 true scaffold_6: 27696771-27701691 Setaria italica
Seita.6G156600 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 27696771-27698770 Setaria italica
Seita.6G156600 5.0kb upstream 5.0kb upstream 7921 true scaffold_6: 27698771-27706691 Setaria italica
Seita.6G156600 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 27701692-27706691 Setaria italica
Seita.6G156600 5.0kb downstream 5.0kb downstream 7921 true scaffold_6: 27693771-27701691 Setaria italica
Seita.6G156600 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 27693771-27698770 Setaria italica
Seita.6G156600 10.0kb upstream 10.0kb upstream 12921 true scaffold_6: 27698771-27711691 Setaria italica
Seita.6G156600 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 27701692-27711691 Setaria italica
Seita.6G156600 10.0kb downstream 10.0kb downstream 12921 true scaffold_6: 27688771-27701691 Setaria italica
Seita.6G156600 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 27688771-27698770 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191098 5267 Panicoideae View MSA
124571918 5269 Grass View MSA
122047464 5273 Angiosperm View MSA
121347035 5274 Embryophyte View MSA
123424416 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.501        
cufflinks 13.888     High  
cufflinks 0.753       Low
cufflinks 0.597       Low
cufflinks 1.89        
cufflinks 14.71     High  
cufflinks 10.779        
cufflinks 20.883     High  
cufflinks 16.698     High  
cufflinks 25.044     High  
cufflinks 16.995     High  
cufflinks 12.235        
cufflinks 8.63        
cufflinks 0.776       Low
cufflinks 18.118     High  
cufflinks 4.14        
cufflinks 19.986     High  
cufflinks 2.851        
cufflinks 0.571       Low
cufflinks 23.405     High  

0 Strain