Gene : Seita.6G159600 S. italica v2.2
Defline:  (1 of 1) PTHR11782:SF42 - APYRASE 3-RELATED Genomic Order:  1596
Name:  ? Seita.6G159600 Secondary Identifier:  ? PAC:32698876
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7177 Setaria italica pathologic  
Sitalica PWY-7184 Setaria italica pathologic  
Sitalica PWY-7185 Setaria italica pathologic  
Sitalica PWY-7210 Setaria italica pathologic  
Sitalica PWY-7211 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G159600 0.5kb upstream 0.5kb upstream 4478 true scaffold_6: 28231921-28236398 Setaria italica
Seita.6G159600 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 28231921-28232420 Setaria italica
Seita.6G159600 0.5kb downstream 0.5kb downstream 4478 true scaffold_6: 28232421-28236898 Setaria italica
Seita.6G159600 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 28236399-28236898 Setaria italica
Seita.6G159600 1.0kb upstream 1.0kb upstream 4978 true scaffold_6: 28231421-28236398 Setaria italica
Seita.6G159600 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 28231421-28232420 Setaria italica
Seita.6G159600 1.0kb downstream 1.0kb downstream 4978 true scaffold_6: 28232421-28237398 Setaria italica
Seita.6G159600 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 28236399-28237398 Setaria italica
Seita.6G159600 2.0kb upstream 2.0kb upstream 5978 true scaffold_6: 28230421-28236398 Setaria italica
Seita.6G159600 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 28230421-28232420 Setaria italica
Seita.6G159600 2.0kb downstream 2.0kb downstream 5978 true scaffold_6: 28232421-28238398 Setaria italica
Seita.6G159600 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 28236399-28238398 Setaria italica
Seita.6G159600 5.0kb upstream 5.0kb upstream 8978 true scaffold_6: 28227421-28236398 Setaria italica
Seita.6G159600 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 28227421-28232420 Setaria italica
Seita.6G159600 5.0kb downstream 5.0kb downstream 8978 true scaffold_6: 28232421-28241398 Setaria italica
Seita.6G159600 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 28236399-28241398 Setaria italica
Seita.6G159600 10.0kb upstream 10.0kb upstream 13978 true scaffold_6: 28222421-28236398 Setaria italica
Seita.6G159600 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 28222421-28232420 Setaria italica
Seita.6G159600 10.0kb downstream 10.0kb downstream 13978 true scaffold_6: 28232421-28246398 Setaria italica
Seita.6G159600 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 28236399-28246398 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041352 5273 Angiosperm View MSA
122192018 5267 Panicoideae View MSA
124571247 5269 Grass View MSA
121344966 5274 Embryophyte View MSA
123426899 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.21       High
cufflinks 3.358        
cufflinks 3.618        
cufflinks 4.201       High
cufflinks 2.844        
cufflinks 3.367        
cufflinks 2.924        
cufflinks 3.001        
cufflinks 1.892       Low
cufflinks 3.686        
cufflinks 3.4        
cufflinks 3.852        
cufflinks 4.101       High
cufflinks 2.557       Low
cufflinks 3.419        
cufflinks 3.7        
cufflinks 4.075        
cufflinks 3.399        
cufflinks 3.435        
cufflinks 3.621        

0 Strain