Gene : Seita.6G161800 S. italica v2.2
Defline:  (1 of 1) PTHR12136//PTHR12136:SF49 - STEROIDOGENIC ACUTE REGULATORY PROTEIN STAR Genomic Order:  1618
Name:  ? Seita.6G161800 Secondary Identifier:  ? PAC:32699392
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G161800 0.5kb upstream 0.5kb upstream 20299 true scaffold_6: 28446459-28466757 Setaria italica
Seita.6G161800 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 28446459-28446958 Setaria italica
Seita.6G161800 0.5kb downstream 0.5kb downstream 20299 true scaffold_6: 28446959-28467257 Setaria italica
Seita.6G161800 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 28466758-28467257 Setaria italica
Seita.6G161800 1.0kb upstream 1.0kb upstream 20799 true scaffold_6: 28445959-28466757 Setaria italica
Seita.6G161800 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 28445959-28446958 Setaria italica
Seita.6G161800 1.0kb downstream 1.0kb downstream 20799 true scaffold_6: 28446959-28467757 Setaria italica
Seita.6G161800 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 28466758-28467757 Setaria italica
Seita.6G161800 2.0kb upstream 2.0kb upstream 21799 true scaffold_6: 28444959-28466757 Setaria italica
Seita.6G161800 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 28444959-28446958 Setaria italica
Seita.6G161800 2.0kb downstream 2.0kb downstream 21799 true scaffold_6: 28446959-28468757 Setaria italica
Seita.6G161800 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 28466758-28468757 Setaria italica
Seita.6G161800 5.0kb upstream 5.0kb upstream 24799 true scaffold_6: 28441959-28466757 Setaria italica
Seita.6G161800 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 28441959-28446958 Setaria italica
Seita.6G161800 5.0kb downstream 5.0kb downstream 24799 true scaffold_6: 28446959-28471757 Setaria italica
Seita.6G161800 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 28466758-28471757 Setaria italica
Seita.6G161800 10.0kb upstream 10.0kb upstream 29799 true scaffold_6: 28436959-28466757 Setaria italica
Seita.6G161800 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 28436959-28446958 Setaria italica
Seita.6G161800 10.0kb downstream 10.0kb downstream 29799 true scaffold_6: 28446959-28476757 Setaria italica
Seita.6G161800 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 28466758-28476757 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191953 5267 Panicoideae View MSA
124573622 5269 Grass View MSA
122042175 5273 Angiosperm View MSA
121350170 5274 Embryophyte View MSA
123428121 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.665       High
cufflinks 2.573        
cufflinks 0.77       Low
cufflinks 0.948       Low
cufflinks 1.356        
cufflinks 2.861        
cufflinks 1.92        
cufflinks 1.658        
cufflinks 1.359        
cufflinks 2.347        
cufflinks 3.426        
cufflinks 7.756       High
cufflinks 2.882        
cufflinks 0.541       Low
cufflinks 3.467        
cufflinks 2.345        
cufflinks 2.948        
cufflinks 2.947        
cufflinks 0.612       Low
cufflinks 3.359        

0 Strain