Gene : Seita.6G161200 S. italica v2.2
Defline:  (1 of 3) 1.14.13.39 - Nitric-oxide synthase (NADPH) / NO synthase Genomic Order:  1612
Name:  ? Seita.6G161200 Secondary Identifier:  ? PAC:32699210
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6845 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G161200 0.5kb upstream 0.5kb upstream 5980 true scaffold_6: 28400323-28406302 Setaria italica
Seita.6G161200 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 28405803-28406302 Setaria italica
Seita.6G161200 0.5kb downstream 0.5kb downstream 5980 true scaffold_6: 28399823-28405802 Setaria italica
Seita.6G161200 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 28399823-28400322 Setaria italica
Seita.6G161200 1.0kb upstream 1.0kb upstream 6480 true scaffold_6: 28400323-28406802 Setaria italica
Seita.6G161200 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 28405803-28406802 Setaria italica
Seita.6G161200 1.0kb downstream 1.0kb downstream 6480 true scaffold_6: 28399323-28405802 Setaria italica
Seita.6G161200 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 28399323-28400322 Setaria italica
Seita.6G161200 2.0kb upstream 2.0kb upstream 7480 true scaffold_6: 28400323-28407802 Setaria italica
Seita.6G161200 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 28405803-28407802 Setaria italica
Seita.6G161200 2.0kb downstream 2.0kb downstream 7480 true scaffold_6: 28398323-28405802 Setaria italica
Seita.6G161200 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 28398323-28400322 Setaria italica
Seita.6G161200 5.0kb upstream 5.0kb upstream 10480 true scaffold_6: 28400323-28410802 Setaria italica
Seita.6G161200 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 28405803-28410802 Setaria italica
Seita.6G161200 5.0kb downstream 5.0kb downstream 10480 true scaffold_6: 28395323-28405802 Setaria italica
Seita.6G161200 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 28395323-28400322 Setaria italica
Seita.6G161200 10.0kb upstream 10.0kb upstream 15480 true scaffold_6: 28400323-28415802 Setaria italica
Seita.6G161200 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 28405803-28415802 Setaria italica
Seita.6G161200 10.0kb downstream 10.0kb downstream 15480 true scaffold_6: 28390323-28405802 Setaria italica
Seita.6G161200 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 28390323-28400322 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179436 5267 Panicoideae View MSA
124568372 5269 Grass View MSA
122044948 5273 Angiosperm View MSA
121347878 5274 Embryophyte View MSA
123426230 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.393        
cufflinks 4.641        
cufflinks 6.209        
cufflinks 3.48        
cufflinks 6.973        
cufflinks 4.661        
cufflinks 8.068        
cufflinks 7.213        
cufflinks 22.033     High High
cufflinks 1.727        
cufflinks 4.493        
cufflinks 1.118       Low
cufflinks 1.132       Low
cufflinks 9.52       High
cufflinks 0.802       Low
cufflinks 6.237        
cufflinks 0.91       Low
cufflinks 7.808        
cufflinks 2.303        
cufflinks 0.763       Low

0 Strain