Gene : Seita.6G164900 S. italica v2.2
Defline:  (1 of 30) PF07714//PF08263//PF13855 - Protein tyrosine kinase (Pkinase_Tyr) // Leucine rich repeat N-terminal domain (LRRNT_2) // Leucine rich repeat (LRR_8) Genomic Order:  1649
Name:  ? Seita.6G164900 Secondary Identifier:  ? PAC:32699781
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G164900 0.5kb upstream 0.5kb upstream 6622 true scaffold_6: 28766929-28773550 Setaria italica
Seita.6G164900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 28773051-28773550 Setaria italica
Seita.6G164900 0.5kb downstream 0.5kb downstream 6622 true scaffold_6: 28766429-28773050 Setaria italica
Seita.6G164900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 28766429-28766928 Setaria italica
Seita.6G164900 1.0kb upstream 1.0kb upstream 7122 true scaffold_6: 28766929-28774050 Setaria italica
Seita.6G164900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 28773051-28774050 Setaria italica
Seita.6G164900 1.0kb downstream 1.0kb downstream 7122 true scaffold_6: 28765929-28773050 Setaria italica
Seita.6G164900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 28765929-28766928 Setaria italica
Seita.6G164900 2.0kb upstream 2.0kb upstream 8122 true scaffold_6: 28766929-28775050 Setaria italica
Seita.6G164900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 28773051-28775050 Setaria italica
Seita.6G164900 2.0kb downstream 2.0kb downstream 8122 true scaffold_6: 28764929-28773050 Setaria italica
Seita.6G164900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 28764929-28766928 Setaria italica
Seita.6G164900 5.0kb upstream 5.0kb upstream 11122 true scaffold_6: 28766929-28778050 Setaria italica
Seita.6G164900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 28773051-28778050 Setaria italica
Seita.6G164900 5.0kb downstream 5.0kb downstream 11122 true scaffold_6: 28761929-28773050 Setaria italica
Seita.6G164900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 28761929-28766928 Setaria italica
Seita.6G164900 10.0kb upstream 10.0kb upstream 16122 true scaffold_6: 28766929-28783050 Setaria italica
Seita.6G164900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 28773051-28783050 Setaria italica
Seita.6G164900 10.0kb downstream 10.0kb downstream 16122 true scaffold_6: 28756929-28773050 Setaria italica
Seita.6G164900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 28756929-28766928 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183366 5267 Panicoideae View MSA
124578964 5269 Grass View MSA
122048314 5273 Angiosperm View MSA
121310927 5274 Embryophyte View MSA
123348299 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.655        
cufflinks 0.742        
cufflinks 0.021     Low Low
cufflinks 0.028     Low Low
cufflinks 0.022     Low Low
cufflinks 1.082       High
cufflinks 0.648        
cufflinks 0.647        
cufflinks 0.27        
cufflinks 0.81       High
cufflinks 0.488        
cufflinks 0.105     Low  
cufflinks 0.205        
cufflinks 0.073     Low  
cufflinks 0.205        
cufflinks 0.642        
cufflinks 0.172        
cufflinks 0.215        
cufflinks 0.043     Low Low
cufflinks 0.309        

0 Strain