Gene : Seita.6G165900 S. italica v2.2
Defline:  (1 of 2) PTHR20978:SF0 - SPLICING FACTOR 3B SUBUNIT 5 Genomic Order:  1659
Name:  ? Seita.6G165900 Secondary Identifier:  ? PAC:32698793
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G165900 0.5kb upstream 0.5kb upstream 4192 true scaffold_6: 28861368-28865559 Setaria italica
Seita.6G165900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 28865060-28865559 Setaria italica
Seita.6G165900 0.5kb downstream 0.5kb downstream 4192 true scaffold_6: 28860868-28865059 Setaria italica
Seita.6G165900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 28860868-28861367 Setaria italica
Seita.6G165900 1.0kb upstream 1.0kb upstream 4692 true scaffold_6: 28861368-28866059 Setaria italica
Seita.6G165900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 28865060-28866059 Setaria italica
Seita.6G165900 1.0kb downstream 1.0kb downstream 4692 true scaffold_6: 28860368-28865059 Setaria italica
Seita.6G165900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 28860368-28861367 Setaria italica
Seita.6G165900 2.0kb upstream 2.0kb upstream 5692 true scaffold_6: 28861368-28867059 Setaria italica
Seita.6G165900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 28865060-28867059 Setaria italica
Seita.6G165900 2.0kb downstream 2.0kb downstream 5692 true scaffold_6: 28859368-28865059 Setaria italica
Seita.6G165900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 28859368-28861367 Setaria italica
Seita.6G165900 5.0kb upstream 5.0kb upstream 8692 true scaffold_6: 28861368-28870059 Setaria italica
Seita.6G165900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 28865060-28870059 Setaria italica
Seita.6G165900 5.0kb downstream 5.0kb downstream 8692 true scaffold_6: 28856368-28865059 Setaria italica
Seita.6G165900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 28856368-28861367 Setaria italica
Seita.6G165900 10.0kb upstream 10.0kb upstream 13692 true scaffold_6: 28861368-28875059 Setaria italica
Seita.6G165900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 28865060-28875059 Setaria italica
Seita.6G165900 10.0kb downstream 10.0kb downstream 13692 true scaffold_6: 28851368-28865059 Setaria italica
Seita.6G165900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 28851368-28861367 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027648 5273 Angiosperm View MSA
122199156 5267 Panicoideae View MSA
124576348 5269 Grass View MSA
123428927 5275 Viridiplantae View MSA
121347588 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.458        
cufflinks 8.863       High
cufflinks 4.889       Low
cufflinks 4.518       Low
cufflinks 4.414       Low
cufflinks 9.017       High
cufflinks 6.51        
cufflinks 6.545        
cufflinks 4.711       Low
cufflinks 10.145       High
cufflinks 6.499        
cufflinks 7.354        
cufflinks 6.738        
cufflinks 6.797        
cufflinks 8.317        
cufflinks 5.905        
cufflinks 8.123        
cufflinks 6.845        
cufflinks 6.026        
cufflinks 6.82        

0 Strain