Gene : Seita.6G163300 S. italica v2.2
Defline:  (1 of 6) PTHR11387 - CYTOCHROME C OXIDASE POLYPEPTIDE VIB Genomic Order:  1633
Name:  ? Seita.6G163300 Secondary Identifier:  ? PAC:32699030
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G163300 0.5kb upstream 0.5kb upstream 1349 true scaffold_6: 28568755-28570103 Setaria italica
Seita.6G163300 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 28568755-28569254 Setaria italica
Seita.6G163300 0.5kb downstream 0.5kb downstream 1349 true scaffold_6: 28569255-28570603 Setaria italica
Seita.6G163300 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 28570104-28570603 Setaria italica
Seita.6G163300 1.0kb upstream 1.0kb upstream 1849 true scaffold_6: 28568255-28570103 Setaria italica
Seita.6G163300 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 28568255-28569254 Setaria italica
Seita.6G163300 1.0kb downstream 1.0kb downstream 1849 true scaffold_6: 28569255-28571103 Setaria italica
Seita.6G163300 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 28570104-28571103 Setaria italica
Seita.6G163300 2.0kb upstream 2.0kb upstream 2849 true scaffold_6: 28567255-28570103 Setaria italica
Seita.6G163300 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 28567255-28569254 Setaria italica
Seita.6G163300 2.0kb downstream 2.0kb downstream 2849 true scaffold_6: 28569255-28572103 Setaria italica
Seita.6G163300 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 28570104-28572103 Setaria italica
Seita.6G163300 5.0kb upstream 5.0kb upstream 5849 true scaffold_6: 28564255-28570103 Setaria italica
Seita.6G163300 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 28564255-28569254 Setaria italica
Seita.6G163300 5.0kb downstream 5.0kb downstream 5849 true scaffold_6: 28569255-28575103 Setaria italica
Seita.6G163300 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 28570104-28575103 Setaria italica
Seita.6G163300 10.0kb upstream 10.0kb upstream 10849 true scaffold_6: 28559255-28570103 Setaria italica
Seita.6G163300 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 28559255-28569254 Setaria italica
Seita.6G163300 10.0kb downstream 10.0kb downstream 10849 true scaffold_6: 28569255-28580103 Setaria italica
Seita.6G163300 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 28570104-28580103 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175416 5267 Panicoideae View MSA
124581416 5269 Grass View MSA
122042745 5273 Angiosperm View MSA
121350001 5274 Embryophyte View MSA
123426527 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.681        
cufflinks 9.903        
cufflinks 4.678       Low
cufflinks 4.433       Low
cufflinks 4.228       Low
cufflinks 10.771        
cufflinks 7.851        
cufflinks 11.228        
cufflinks 6.368        
cufflinks 12.053       High
cufflinks 6.673        
cufflinks 8.738        
cufflinks 10.801        
cufflinks 10.198        
cufflinks 9.756        
cufflinks 5.992        
cufflinks 12.055       High
cufflinks 10.703        
cufflinks 6.294        
cufflinks 11.498       High

0 Strain