Gene : Seita.6G163700 S. italica v2.2
Defline:  (1 of 1) PTHR21145//PTHR21145:SF2 - CHORISMATE MUTASE Genomic Order:  1637
Name:  ? Seita.6G163700 Secondary Identifier:  ? PAC:32699117
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3461 Setaria italica pathologic  
Sitalica PWY-3462 Setaria italica pathologic  
Sitalica PWY-3481 Setaria italica pathologic  
Sitalica PWY-6120 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G163700 0.5kb upstream 0.5kb upstream 3213 true scaffold_6: 28595003-28598215 Setaria italica
Seita.6G163700 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 28595003-28595502 Setaria italica
Seita.6G163700 0.5kb downstream 0.5kb downstream 3213 true scaffold_6: 28595503-28598715 Setaria italica
Seita.6G163700 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 28598216-28598715 Setaria italica
Seita.6G163700 1.0kb upstream 1.0kb upstream 3713 true scaffold_6: 28594503-28598215 Setaria italica
Seita.6G163700 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 28594503-28595502 Setaria italica
Seita.6G163700 1.0kb downstream 1.0kb downstream 3713 true scaffold_6: 28595503-28599215 Setaria italica
Seita.6G163700 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 28598216-28599215 Setaria italica
Seita.6G163700 2.0kb upstream 2.0kb upstream 4713 true scaffold_6: 28593503-28598215 Setaria italica
Seita.6G163700 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 28593503-28595502 Setaria italica
Seita.6G163700 2.0kb downstream 2.0kb downstream 4713 true scaffold_6: 28595503-28600215 Setaria italica
Seita.6G163700 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 28598216-28600215 Setaria italica
Seita.6G163700 5.0kb upstream 5.0kb upstream 7713 true scaffold_6: 28590503-28598215 Setaria italica
Seita.6G163700 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 28590503-28595502 Setaria italica
Seita.6G163700 5.0kb downstream 5.0kb downstream 7713 true scaffold_6: 28595503-28603215 Setaria italica
Seita.6G163700 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 28598216-28603215 Setaria italica
Seita.6G163700 10.0kb upstream 10.0kb upstream 12713 true scaffold_6: 28585503-28598215 Setaria italica
Seita.6G163700 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 28585503-28595502 Setaria italica
Seita.6G163700 10.0kb downstream 10.0kb downstream 12713 true scaffold_6: 28595503-28608215 Setaria italica
Seita.6G163700 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 28598216-28608215 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185812 5267 Panicoideae View MSA
124580660 5269 Grass View MSA
122050627 5273 Angiosperm View MSA
121312036 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.369        
cufflinks 0.825        
cufflinks 0.537        
cufflinks 0.821        
cufflinks 1.036        
cufflinks 0.533        
cufflinks 0.318        
cufflinks 0.911        
cufflinks 0.383        
cufflinks 1.447        
cufflinks 0.567        
cufflinks 4.356       High
cufflinks 2.853       High
cufflinks 0.546        
cufflinks 2.399       High
cufflinks 0.337        
cufflinks 3.657       High
cufflinks 0.122       Low
cufflinks 0.48        
cufflinks 0.885        

0 Strain