Gene : Seita.6G254400 S. italica v2.2
Defline:  (1 of 1) PTHR10168:SF14 - GLUTAREDOXIN-C5, CHLOROPLASTIC-RELATED Genomic Order:  2544
Name:  ? Seita.6G254400 Secondary Identifier:  ? PAC:32698885
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica THIOREDOX-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G254400 0.5kb upstream 0.5kb upstream 3028 true scaffold_6: 35911626-35914653 Setaria italica
Seita.6G254400 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 35911626-35912125 Setaria italica
Seita.6G254400 0.5kb downstream 0.5kb downstream 3028 true scaffold_6: 35912126-35915153 Setaria italica
Seita.6G254400 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 35914654-35915153 Setaria italica
Seita.6G254400 1.0kb upstream 1.0kb upstream 3528 true scaffold_6: 35911126-35914653 Setaria italica
Seita.6G254400 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 35911126-35912125 Setaria italica
Seita.6G254400 1.0kb downstream 1.0kb downstream 3528 true scaffold_6: 35912126-35915653 Setaria italica
Seita.6G254400 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 35914654-35915653 Setaria italica
Seita.6G254400 2.0kb upstream 2.0kb upstream 4528 true scaffold_6: 35910126-35914653 Setaria italica
Seita.6G254400 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 35910126-35912125 Setaria italica
Seita.6G254400 2.0kb downstream 2.0kb downstream 4528 true scaffold_6: 35912126-35916653 Setaria italica
Seita.6G254400 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 35914654-35916653 Setaria italica
Seita.6G254400 5.0kb upstream 5.0kb upstream 7528 true scaffold_6: 35907126-35914653 Setaria italica
Seita.6G254400 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 35907126-35912125 Setaria italica
Seita.6G254400 5.0kb downstream 5.0kb downstream 7528 true scaffold_6: 35912126-35919653 Setaria italica
Seita.6G254400 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 35914654-35919653 Setaria italica
Seita.6G254400 10.0kb upstream 10.0kb upstream 12528 true scaffold_6: 35902126-35914653 Setaria italica
Seita.6G254400 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 35902126-35912125 Setaria italica
Seita.6G254400 10.0kb downstream 10.0kb downstream 12528 true scaffold_6: 35912126-35924653 Setaria italica
Seita.6G254400 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 35914654-35924653 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026565 5273 Angiosperm View MSA
122189726 5267 Panicoideae View MSA
124576757 5269 Grass View MSA
121350843 5274 Embryophyte View MSA
123428660 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.283        
cufflinks 9.999        
cufflinks 6.949        
cufflinks 9.739        
cufflinks 14.963     High  
cufflinks 9.555        
cufflinks 10.983        
cufflinks 21.995     High High
cufflinks 22.632     High High
cufflinks 10.984        
cufflinks 5.464       Low
cufflinks 6.107        
cufflinks 6.17        
cufflinks 13.643        
cufflinks 5.59       Low
cufflinks 8.809        
cufflinks 7.381        
cufflinks 3.719       Low
cufflinks 22.283     High High
cufflinks 9.381        

0 Strain