Gene : Seita.6G253600 S. italica v2.2
Defline:  (1 of 1) PTHR20863:SF2 - ZINC FINGER PROTEIN 593 Genomic Order:  2536
Name:  ? Seita.6G253600 Secondary Identifier:  ? PAC:32700630
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G253600 0.5kb upstream 0.5kb upstream 2409 true scaffold_6: 35869439-35871847 Setaria italica
Seita.6G253600 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 35871348-35871847 Setaria italica
Seita.6G253600 0.5kb downstream 0.5kb downstream 2409 true scaffold_6: 35868939-35871347 Setaria italica
Seita.6G253600 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 35868939-35869438 Setaria italica
Seita.6G253600 1.0kb upstream 1.0kb upstream 2909 true scaffold_6: 35869439-35872347 Setaria italica
Seita.6G253600 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 35871348-35872347 Setaria italica
Seita.6G253600 1.0kb downstream 1.0kb downstream 2909 true scaffold_6: 35868439-35871347 Setaria italica
Seita.6G253600 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 35868439-35869438 Setaria italica
Seita.6G253600 2.0kb upstream 2.0kb upstream 3909 true scaffold_6: 35869439-35873347 Setaria italica
Seita.6G253600 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 35871348-35873347 Setaria italica
Seita.6G253600 2.0kb downstream 2.0kb downstream 3909 true scaffold_6: 35867439-35871347 Setaria italica
Seita.6G253600 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 35867439-35869438 Setaria italica
Seita.6G253600 5.0kb upstream 5.0kb upstream 6909 true scaffold_6: 35869439-35876347 Setaria italica
Seita.6G253600 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 35871348-35876347 Setaria italica
Seita.6G253600 5.0kb downstream 5.0kb downstream 6909 true scaffold_6: 35864439-35871347 Setaria italica
Seita.6G253600 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 35864439-35869438 Setaria italica
Seita.6G253600 10.0kb upstream 10.0kb upstream 11909 true scaffold_6: 35869439-35881347 Setaria italica
Seita.6G253600 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 35871348-35881347 Setaria italica
Seita.6G253600 10.0kb downstream 10.0kb downstream 11909 true scaffold_6: 35859439-35871347 Setaria italica
Seita.6G253600 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 35859439-35869438 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195253 5267 Panicoideae View MSA
124570755 5269 Grass View MSA
122041921 5273 Angiosperm View MSA
123428955 5275 Viridiplantae View MSA
121346205 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.948     High  
cufflinks 20.881     High  
cufflinks 12.653     High  
cufflinks 10.032       Low
cufflinks 10.688     High Low
cufflinks 24.364     High High
cufflinks 15.608     High  
cufflinks 19.713     High  
cufflinks 21.054     High  
cufflinks 29.314     High High
cufflinks 15.116     High  
cufflinks 15.929     High  
cufflinks 16.098     High  
cufflinks 19.616     High  
cufflinks 15.563     High  
cufflinks 8.106       Low
cufflinks 20.659     High  
cufflinks 9.557       Low
cufflinks 10.108       Low
cufflinks 19.475     High  

0 Strain